44662a28a9d2411b584c8b53be24151b *DESCRIPTION
3946b81b715810c7ccde35f41599ffa2 *NAMESPACE
cbdfaece85dac65a6a1d2f6c224084d2 *NEWS
beb30e190d5f4353f953493dfc281109 *R/Arena.R
dfb595a686811f478f2a97f95078ac3f *R/BacArena.R
d5b4b038bcd6be8d38573ba9256be306 *R/Organism.R
9c40a6e3df8adfb53ab113785b2f2cfa *R/RcppExports.R
d85f3480b81989d050ace2db717f7327 *R/Stuff.R
57baac3f6363ea9e3f2b129b41e85deb *R/Substance.R
ead423d9c9b80187f059f630e5111c15 *README.md
1ed5c308919975e91714d304a9652ebd *build/vignette.rds
1fc6211f1766fd4af401da248b1c64f1 *inst/doc/BacArena-Introduction.R
6a3582790368153dc88647fad8e10c3c *inst/doc/BacArena-Introduction.Rmd
2c163710bcea47d9499d690d4a2213bd *inst/doc/BacArena-Introduction.pdf
d2d780ddc8da5adb62c535a941a5aae1 *man/Arena-class.Rd
e300b9ed6234aa5c0d3e23c916c3d011 *man/Arena-constructor.Rd
55fd66c9504b2c1183e6f0b1151d8623 *man/Bac-Constructor.Rd
50c9af587a9034ccd0286122496344bf *man/Bac.Rd
396202730de3a207b53e3389b7a23c68 *man/BacArena.Rd
12abd6d44eb5094c2e37edafd541de13 *man/Eval-class.Rd
7bead5579c254175a6609599232ff522 *man/Eval-constructor.Rd
52c73dbc02c633b40c82be57daa04c30 *man/Human-constructor.Rd
dbec8194f0564ee5992ce899b8b930f4 *man/Human.Rd
c0b42266aa6e1b54828182b135367071 *man/NemptyHood.Rd
bf02f9cd7e4a1e399cf0f4f83435da5d *man/Organism-class.Rd
218bda8e682b826a105a0f99ee59116f *man/Organism-constructor.Rd
6baba829024ed6543b927398bdab3476 *man/Substance-constructor.Rd
2b77bacf7f39ef04df2662820ee9f4be *man/Substance.Rd
45a36c5cbafb4aabe66be0af0f533876 *man/addDefaultMed.Rd
1bbc380c549089a65715b1650c81dc2e *man/addEssentialMed.Rd
fe819c962a3fb64dcaa9be07fdb10798 *man/addEval.Rd
d21455fc76bda61ebc3f7f73095c20d9 *man/addOrg.Rd
792c945b5cfb0ba2b2cc4d0d8d52ef7f *man/addSubs.Rd
8a1ca82e8702274bf6790973e91ae22b *man/cellgrowth.Rd
c9bb6d8a5fc27d58ae073569577b2a8f *man/changeDiff.Rd
76900f3a88b4310fdaae98fdfd4cb265 *man/changeFobj.Rd
4642d527b2dcabe7291c18c4f0d3b6aa *man/changeOrg.Rd
82cdf4737ba2e4f8b64ae4b13fc008b5 *man/changeSub.Rd
b8953903a67833f6fed3fee01dc3b8ee *man/checkCorr.Rd
2299681c9dbf6cf38f9d4ce0c2a3975e *man/checkPhen.Rd
5779b91c388f3c29eed20e6b96204066 *man/checkPhen_par.Rd
8b4b3d77da875abf134c6d4ab0b70439 *man/chemotaxis.Rd
20a9b18770222d552791b8098cc59193 *man/constrain.Rd
d120b2fe301cc2fa179ab5068c2b8ec4 *man/consume.Rd
453629a7e474c929f1fa95b30090f5f0 *man/createGradient.Rd
d5ea188cff66162bd038a5faf1565228 *man/dat2mat.Rd
4746af3d5332e7af48f56f0a08d8d610 *man/diffuse.Rd
31b5db4ca178696fdb9c9dd905912575 *man/diffusePDE.Rd
e0546ef4d1b9de91580c9cd8ad22be7d *man/diffuseR.Rd
0840503e60d1197adeb99ec6d518f70a *man/diffuse_par.Rd
cfbbfbe9b7d1de0dc79d7608a0fd5c51 *man/emptyHood.Rd
308845710f5662b3fa5984ec328f1d00 *man/evalArena.Rd
9e440a52861845f5846a3dfe9d80a8d8 *man/extractMed.Rd
e269e7a8304ebe8369a41920f00a95f7 *man/findFeeding.Rd
fdd851e1b6410417ecbd7545c3825fea *man/findFeeding2.Rd
dd21b5c8f83af113729cc17ae21cf202 *man/findFeeding3.Rd
b0200bda33f99a458133b8d460fd18c8 *man/findInArena.Rd
9e47b7e0ad22ad44acf4a2c48f95265c *man/flushSubs.Rd
7346248b0aef939da27fec13d1760e16 *man/getArena.Rd
39b49e2c36e9cca45be415fb97e7c8aa *man/getCorrM.Rd
eb456def240275bd22d0dca00756b256 *man/getPhenoMat.Rd
82783b4cb582251dad339d7929514bca *man/getPhenotype.Rd
d67f5d46977bf9c7ee6d5e3863cfeb56 *man/getSubHist.Rd
bbd7569f393bbdf85a94d9e703847131 *man/getSublb.Rd
93c9baada12cb1c2ed5e86997c82a1f5 *man/getVarSubs.Rd
8a4f993687cb5d9a91f5239f0e056554 *man/growExp.Rd
543ed3cdef08294c3aecee5969c68081 *man/growLin.Rd
9aabbee9d5aa1c9490b40c14ddf314de *man/growth.Rd
9b994dce95d34860e86ddff1d9ce547e *man/growth_par.Rd
8c725a5e0b1aeeffac4a0f3bfc40842f *man/lsd.Rd
6bd8e67c4d20bc17eda660b67410ada8 *man/lysis.Rd
07e4277b114ce9fd3e25a760c1e784b1 *man/minePheno.Rd
8cdab46461497f57efb6aeaf8d88b128 *man/move.Rd
425fbce547566e8b3b91edd070699c89 *man/openArena.Rd
42fa42a9b9ae63b40050bc6345ce379a *man/optimizeLP.Rd
44060e09f105b3ab220bf94faa6a16ee *man/plotAbundance.Rd
da027b5da0ca0272dfc32d4750d8ccce *man/plotCurves.Rd
7157af931cf39b15d743f8383fca061a *man/plotCurves2.Rd
4db455b22ce7e59262c49bca07478a86 *man/plotFluxVar.Rd
ad0efb55504db955af9bd68d4ad9ab0a *man/plotGrowthCurve.Rd
8c53053831de104158be53de36faadf0 *man/plotInterNum.Rd
7f15e76f8a2e5172827d53f46b82f850 *man/plotPhenCurve.Rd
68bcd8aca8a88b001e22647c151df0bc *man/plotPhenNum.Rd
7c03f7a2283ee564b3bd2d94271cb90a *man/plotShadowCost.Rd
445bcaf6df0c79de8e8715b6689b4cb7 *man/plotSpecActivity.Rd
f212822c79180557e32ba10dba3a024a *man/plotSubCurve.Rd
77d311046e3e4e97a6a5489a2f917ae6 *man/plotSubUsage.Rd
634f140eddc57bb633a1e616bd31e92c *man/plotSubVar.Rd
44d5e9b0cc18b330d11fb734ea309e8b *man/plotTotFlux.Rd
769deacc3a83784345f9577ec738af82 *man/redEval.Rd
bedc10142e70b1febcc98e7d38984912 *man/reset_screen.Rd
8add4b48b9e2250e4840265d8db4508e *man/rmSubs.Rd
295fe6c7b83161b22f847d68783e3e84 *man/selPheno.Rd
de167cc0e8de02db9e7009731dc8497d *man/setKinetics.Rd
f66f65706eeb9cae560293f4358b2087 *man/simBac.Rd
12e4259cd263db434baf155ee2e55e3c *man/simBac_par.Rd
6bcaaf1fe928b7f0f1da6f357eeba6bb *man/simEnv.Rd
454c86ccb1ef9359b550706fe3be2ed3 *man/simEnv_par.Rd
5c4ca64cf7ebca5fb88fa34d0e00b41e *man/simHum.Rd
3bdb5231eaa834616df605fe523fd431 *man/statPheno.Rd
bee748ad49686ef214b32f2ecfe03820 *man/stirEnv.Rd
dcd2405aed8e2b00e42ba3d3c8323e3a *man/usd.Rd
5e0f1972c43b8d6cd33672cfbf7e12a7 *src/RcppExports.cpp
13aeea7eb96b66ba98098659d3cbe2ce *src/addBac.cpp
93fe24d90a8dbb8a8e301c955568cd07 *src/diff.cpp
af7cf759c6fef52c14ed3a6bb40dc2a7 *src/duplicate.cpp
77e6d68dd1da9733aec3c51956f40bc2 *src/move.cpp
6a3582790368153dc88647fad8e10c3c *vignettes/BacArena-Introduction.Rmd
b3db60d08f42b1bb6fccd10fd1e87e95 *vignettes/BacArena-Introduction.html
