b43912b84666dc9d3b485c6255942952 *DESCRIPTION
824738d9e64b71dcdc15f3dd4cc9f7d1 *NAMESPACE
db071a58f81acfd11168f995053dd12f *NEWS.md
8fcca8419edb8e5f6f05edb5a9ab164a *R/RcppExports.R
bf9d7e445b23d74a87848ab6b96135a7 *R/compile_reactions.R
8187cadc939326b491c14d43b5db902a *R/ode_em.R
ca7f7bed69c58ffba28e99dad5f38116 *R/package.R
29c88d8ada2ce642e79c72cd95c598d2 *R/port_reactions.R
20e60bf0e3cbe5102622be377a595b99 *R/reaction.R
c21bd34e407b6fb9ea2b30394ae65d5a *R/ssa_btl.R
f795e74184f331a7f8b2c10da7c8ba2e *R/ssa_etl.R
b7b8f91d2169ae81380dc6a6688cb423 *R/ssa_exact.R
22e74d4118b9cf37ecaf2fe701d7015a *R/ssa_method.R
6beb908b6b6ab7e726e4bacd15e24912 *R/ssa_plot.R
c3d7b66d3367069b461cf25f600ce460 *R/ssa_simulation.R
acbf8be5ab92cc08b9c202088cbcab07 *R/zzz.R
a72946a944198fe54dd97247f0285e3e *README.md
cdbdfcd99abd845a0effb25dee6e981b *build/partial.rdb
367d1644e766a45d72e03f469cf993e2 *build/vignette.rds
6259d0e8d0745ae7b3f91fa929136220 *inst/doc/an_introduction.R
eb938dd5bf4359137d770768c897dc3c *inst/doc/an_introduction.Rmd
d461efa6e9ccf5e2907bfecb6ab98c93 *inst/doc/an_introduction.html
3f33398e5a745c5868294073192ded1c *inst/doc/converting_from_GillespieSSA.R
47746770110cc68b84b66f35fae83c1a *inst/doc/converting_from_GillespieSSA.Rmd
c2086f91ea96dee04b3266bdc9638d45 *inst/doc/converting_from_GillespieSSA.html
ea28ca14a02f3042f16a7ec1c9ffd3d7 *inst/doc/decaying_dimer.R
6f47b4e254ec886cea970c410da995f3 *inst/doc/decaying_dimer.Rmd
4ef9c092163d1d7b50f2b98c4d244ca2 *inst/doc/decaying_dimer.html
e4fad73432106caa5cc6cee9cc6d0119 *inst/doc/epi_chain.R
a7cd8a2160162c9a6b066c0a692e1a03 *inst/doc/epi_chain.Rmd
d9f15215409f91d83f0cc5dcaaa03eac *inst/doc/epi_chain.html
df35701ec3d5431e46380cb634f5285e *inst/doc/linear_chain.R
d241625929888c6741be09391f7a13c2 *inst/doc/linear_chain.Rmd
d98242347afb1ff445a34821730d1860 *inst/doc/linear_chain.html
731cb4f07f219d66c90e6513c8b2e303 *inst/doc/logistic_growth.R
4b965e551fa7ccde34c25ba7068bfbdc *inst/doc/logistic_growth.Rmd
8dbcc897204450526380ee81264aa0b7 *inst/doc/logistic_growth.html
72d80133111eaf60d5e7cd959263eba7 *inst/doc/lotka_predator_prey.R
9326f9bfc31d687d3be5c322cebec6f6 *inst/doc/lotka_predator_prey.Rmd
a70f71a01ac009b1bfd82a2741398e9d *inst/doc/lotka_predator_prey.html
982d701ae77f8067874109debaa33ecc *inst/doc/radioactive_decay.R
1f81b1df3982b49719d59f1f528df279 *inst/doc/radioactive_decay.Rmd
78d3a30d2f3a693a228d54399d915be4 *inst/doc/radioactive_decay.html
bf14a1fdda72e32ea87067d94e7e0a69 *inst/doc/rm_predator_prey.R
6117cd70a102e574eb32c91b68c51008 *inst/doc/rm_predator_prey.Rmd
6c398dc3f6c051aa57d6a2b4556fbf0d *inst/doc/rm_predator_prey.html
6273d82ad27b9c6b81720a65c12680da *inst/doc/sir.R
e7391b08c6fab835d293a636a3690c89 *inst/doc/sir.Rmd
5fabbd24f1a9954c9aaaea004cce0f0a *inst/doc/sir.html
1d412520a0f0af2c8d4943ea186d2be5 *man/GillespieSSA2.Rd
edbbb3bb1ca61fbb2f6dc2cd2469fd14 *man/compile_reactions.Rd
fd4c47d761c9f639c188d297da449d64 *man/figures/dependencies.png
47b54f1c878c06fc218c268b82d13ef4 *man/ode_em.Rd
c96b29826ec798db4de2bbb74affcea1 *man/plot_ssa.Rd
c0210cda6bede49cfe3187de64b0563b *man/port_reactions.Rd
d25d966dbf3fed048815f86e37d149e1 *man/print_ssa.Rd
003f2ed2f7a5820b7e778222e971ded5 *man/reaction.Rd
8fa77283b714c0b59d071c04df3a6229 *man/ssa.Rd
032520bc72e0f9ca30b91dbdea4c414c *man/ssa_btl.Rd
36b134ba50341247c4f15abc0328e0a1 *man/ssa_etl.Rd
ca1bc07dc11c6a0af5bdec024514398a *man/ssa_exact.Rd
ffcbd780a1d59d9cf7221e533168bea7 *src/RcppExports.cpp
e372bcef5c17f419bb097ceb4faac4dc *src/ode_em.cpp
9e1d45a2fe4d7c5632cf4c333f90e1ef *src/ssa_btl.cpp
22d3daae3990928fce6fffbb657a1396 *src/ssa_etl.cpp
3b960fed578440c1e0bd9013ee0ec7e5 *src/ssa_exact.cpp
b461dd928b90cb3c7ad01db3c01e7869 *src/ssa_method.cpp
ecab019f3b376fe4149f3425293c4016 *src/ssa_method.h
14ea6aec9f4f57f2e87dc4acc2e49cc1 *src/ssa_simulation.cpp
d2da4ce08e70c1728f959f7e47bf94ee *src/test_helper_funs.cpp
519f20d4b66bf43e926da24ee495c7bf *src/utils.cpp
bde4cd198553f4f2f2bb64ade0b2f79e *src/utils.h
1f805c4be7c74e9df39994f09c36fa25 *tests/testthat.R
b42108b1f1173cd9d808546e2add30a1 *tests/testthat/helper-test_propensity.R
3f38c64eff5561aafca0ad2172b8874e *tests/testthat/helper-test_ssa_step.R
9598bac6aa535675370ee8e7fabeb5fe *tests/testthat/test-compile_reactions.R
abb0748b010db2641b963047e151e6dc *tests/testthat/test-ode_em.R
ed1ac27aaa28558d05f8ba4ee2327c4e *tests/testthat/test-reaction.R
ef2fd0b8994b8ccfe59875af12b06277 *tests/testthat/test-ssa.R
9bf4dc603912d1257df777b56624f433 *tests/testthat/test-ssa_btl.R
36fc2bb46a63705dfb136b951eea2c6f *tests/testthat/test-ssa_etl.R
95e9d9020887f6a76fcf9cf6471f3667 *tests/testthat/test-ssa_exact.R
eb938dd5bf4359137d770768c897dc3c *vignettes/an_introduction.Rmd
47746770110cc68b84b66f35fae83c1a *vignettes/converting_from_GillespieSSA.Rmd
6f47b4e254ec886cea970c410da995f3 *vignettes/decaying_dimer.Rmd
a7cd8a2160162c9a6b066c0a692e1a03 *vignettes/epi_chain.Rmd
d241625929888c6741be09391f7a13c2 *vignettes/linear_chain.Rmd
4b965e551fa7ccde34c25ba7068bfbdc *vignettes/logistic_growth.Rmd
9326f9bfc31d687d3be5c322cebec6f6 *vignettes/lotka_predator_prey.Rmd
1f81b1df3982b49719d59f1f528df279 *vignettes/radioactive_decay.Rmd
6117cd70a102e574eb32c91b68c51008 *vignettes/rm_predator_prey.Rmd
e7391b08c6fab835d293a636a3690c89 *vignettes/sir.Rmd
