Package: P2C2M
Type: Package
Title: Posterior Predictive Checks of Coalescent Models
Version: 0.6
Date: 2015-01-28
Author: Michael Gruenstaeudl, Noah Reid
Maintainer: Michael Gruenstaeudl <gruenstaeudl.1@osu.edu>
Depends: R (>= 3.0.0)
Imports: ape (>= 3.1-4), apTreeshape (>= 1.4-5), ggplot2 (>= 1.0.0),
        rPython (>= 0.0-5), stringr (>= 0.6.2)
Suggests: genealogicalSorting (>= 0.92), phybase (>= 1.3.1), Rmpi (>=
        0.6-5), xtermStyle (>= 2.2-4)
Description: P2C2M is an R package to conduct posterior predictive checks of coalescent models using gene and species trees generated by BEAST or *BEAST. The functionality of P2C2M can be extended via two third-party R packages that are available from the author websites only: genealogicalSorting (http://www.genealogicalsorting.org) and phybase (http://odyssey.bioinformatics.uga.edu/~lliu/phybase/). To use these optional packages, the installation of the Python libraries NumPy (>= 1.9.0) and DendroPy (= 3.12.0) is required.
License: GPL (>= 2)
OS_type: unix
NeedsCompilation: yes
SystemRequirements: gcc (>= 4.9), Python (= 2.7)
Packaged: 2015-01-29 20:18:50 UTC; michael
Repository: CRAN
Date/Publication: 2015-01-30 08:27:39
