a7d66b35b2f74699dd80bcf72cf078a3 *DESCRIPTION
cbd309b93ce8aa8850abaea1f301a7a1 *NAMESPACE
8b526a27c48b0a74dadc35975c342f6b *NEWS.md
e73d99742effb8bae8a45ed394f7977c *R/AbForests_AntibodyForest.R
ed72fd295542859bb8bfa77ea0023e7f *R/AbForests_CompareForests.R
f3c8bba8fcc3906ff8c23f9cc4f24536 *R/AbForests_ConvertStructure.R
5b14be381c3522d34d7c8a2667adbc1e *R/AbForests_CsvToDf.R
dbe352b77605475c60644231e60ec692 *R/AbForests_ForestMetrics.R
7a6f42a7dc2e47c8d7bf34aef2e313c6 *R/AbForests_PlotGraphs.R
fa7d30971a78653b2c8c48180f46b1ef *R/AbForests_PlyloToMatrix.R
3bb881b6fea868fa0957360d54c8fe1c *R/AbForests_RemoveNets.R
1efa4b2375ae3056e589f80c86f1798c *R/AbForests_SubRepertoiresByCells.R
14640d367455fdfdacd9e4db0ca812c2 *R/AbForests_SubRepertoiresByUniqueSeq.R
93d30c9b398be54bb234d7d4fcbccc89 *R/AbForests_UniqueAntibodyVariants.R
556d8bc4b310be9b5264835a3faf4de5 *R/AbForests_data.R
50922049b263e6bff74260ea85801e2c *R/AbForests_internal.R
8147951b1d588625077bcb738a99ee93 *R/AlphaFold_prediction.R
f34a83991d377052705bf23efdf567be *R/AntibodyForests.R
97f38e6046f8c20731e911dacf77198c *R/AntibodyForests_communities.R
7630fc86c9f3864b26eace1a9bdfc87b *R/AntibodyForests_dynamics.R
e68a5f0e3dab945b5fca9571e7a4bfb3 *R/AntibodyForests_embeddings.R
e30a59d175f2185e73c9184de1bf933c *R/AntibodyForests_expand_intermediates.R
b9790a9c277717470a2402349da48c6c *R/AntibodyForests_heterogeneous.R
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eac846b827438604e5263902381b33d8 *R/AntibodyForests_join_trees.R
b0d64d7713602669b645ce7d56ed8c50 *R/AntibodyForests_kernels.R
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9fa668da147d70c62e1a4fb7fbb60488 *R/AntibodyForests_metrics.R
286f4b491892eb0adec0dfcda7c3de21 *R/AntibodyForests_node_transitions.R
916fe4394f70a406b0cb8006a7979ffd *R/AntibodyForests_overlap.R
d082276207cf7847d6daf9e92190fcca *R/AntibodyForests_paths.R
3251953df8e6c7dbec449a8da29adec8 *R/AntibodyForests_phylo.R
93bf8b5000dd7bbad24441a650879e48 *R/AntibodyForests_plot.R
c83d6c15000ebbe2f1ac301a6038af5e *R/AntibodyForests_plot_metrics.R
0ac31aadeaeebeae4d244197557c13b5 *R/CellPhoneDB_analyse.R
3e298a41e61abb1f081703e31a3bf2f1 *R/Echidna_Internal_functions.R
295ed0d377033834ffe576b12d0d79e4 *R/Echidna_data.R
b7165f63ac8093017fca7edafb0825a2 *R/Echidna_other_functions.R
50d64edfa61d3f9f977a0aa463864d0f *R/Echidna_simulate_repertoire.R
6b0e52d41aa1c00a37b2bc0aa7df2e44 *R/Echidna_vae_generate.R
d426bde298042f9ec1c4a0028f61cb56 *R/Echidna_vae_internal_functions.R
611705ba350871e6ef1e236f258a8c9d *R/GEX_DEgenes.R
9b053e94b3c01c78de060953b9036791 *R/GEX_DEgenes_persample.R
98f4189ebc34ae984d545a922c702217 *R/GEX_GOterm.R
13a3b885f9d66d4ff6983a1ccd82de1b *R/GEX_GSEA.R
8560e21e3fe64340bc2242d03aa3a91d *R/GEX_clonotype.R
935580d7551fbd42e193297c61b29cb3 *R/GEX_cluster_genes.R
d6c21fb579e75f15f6c110e7d02b08ce *R/GEX_cluster_genes_heatmap.R
ee748b44b2430e712d2e96ddad66d4c4 *R/GEX_cluster_membership.R
db38f0f07335a6ab15915c0b62c92415 *R/GEX_coexpression_coefficient.R
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3f64aeceb93dee42802681817a446276 *R/GEX_gene_visualization.R
5f857d8c5f495c28f575b5028ca65ec9 *R/GEX_heatmap.R
7d224ba8b8e47fcdaaff49de1d7a6880 *R/GEX_lineage_trajectories.R
2a999a47f6722a55b1db91052da6da97 *R/GEX_pairwise_degs.R
89fc4baa1f6ac03ef5864150dbdc3a77 *R/GEX_phenotype.R
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1fab72c8cbad4d0c5a019bc0683c056d *R/GEX_projecTILS.R
2f9182b047c8361b9a2d74623fe105f6 *R/GEX_proportions_barplot.R
2fc87357bfc06f27818af47353d18efc *R/GEX_pseudobulk.R
8359f601cad6ad5e136fdd00f5b64c45 *R/GEX_pseudotime_trajectory_plot.R
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854cd5798d14f048e222ee2672125dc5 *R/GEX_topN_DE_genes_per_cluster.R
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5e8a7b9ef79925ec00e587d1c59732a6 *R/GEX_visualize_clones.R
03bf426a177c95b7e37a865c1c09636e *R/GEX_volcano.R
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965bc84756ac869f386acdd98fa11c10 *R/PlatypusML_feature_extraction_GEX.R
a7326968dc318b2b6012d320ac6309a4 *R/PlatypusML_feature_extraction_VDJ.R
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bf3edb0681fe2a0b6d59b5d664cb44a6 *R/Spatial_selection_expanded_clonotypes.R
7948a2bb7b607b74dc6aa89496781620 *R/Spatial_selection_of_cells_on_image.R
55ac2bc845a3bba71c5127f9b8e26d89 *R/Spatial_vgm_formation.R
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71188061f2be7e2ce9b4bd0389a753f1 *R/VDJ_GEX_clonotype_clusters_circos.R
1b8d8cb14062e7eca934516eea0f2729 *R/VDJ_GEX_expansion.R
3b4b29dca14bf3b7fb300cf4d0a0752f *R/VDJ_GEX_integrate.R
4f5ef2348c240a13731ca5e24af56b55 *R/VDJ_GEX_matrix.R
5e47511eca5a44c3bced79de222a2a3e *R/VDJ_GEX_overlay_clones.R
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1ae7ad8bb34c6d7819bc13b35772c6dd *R/VDJ_Vgene_usage.R
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9e5feb5beb142cf1f54315430415ca26 *R/VDJ_bulk_to_vgm.R
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780bce5c18b725beaf9f8f16d0208850 *README.md
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88c197db69c3d02f010253a42ade9419 *data/Bcell_sequences_example_tree.rda
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