53ef9b1a5256203b47abfed7cd92cdb2 *DESCRIPTION
b0a8d71405537977e14788171ab70904 *NAMESPACE
c1635a7647eff8725c7b67dd5caf2bb3 *NEWS
8752bf557c39a0d018852f430a5b6603 *R/CAST.r
06e0f438e36ec3d80ae1a6a03c5c1e80 *R/GRR_matrix.r
4b6b85116cbaaec27062ec85b6b0b689 *R/NullObject_parameters.r
1e215259e657949704e90561e48d6e56 *R/Pi_matrix.r
764c0e80170ee90a9504a3f84efdb6c0 *R/RAVA_FIRST.r
afd2f25801a82d4242cfde58b5f09563 *R/SKAT.r
201e59497e0c7762c643243dd1b33b4b *R/SKAT_NullObject.r
5fa458a982afff540d42b6ba49de64bc *R/SKAT_bootstrap.r
b83dc15d3a754c029b92b86b1da6b44e *R/SKAT_continuous.r
3a9c5c2390bc042aea757034924f2633 *R/SKAT_permutations.r
937f1d0b8ea0a7cd9e2458c3c8772d7f *R/SKAT_theoretical.r
f1eb65b01064d0db1260f9089edd373c *R/WSS.r
773d20a05a9dbbc4ad5b3d71832b02a8 *R/adjustedCADD_annotation.r
a8b41d5ae9464bfb1a1e3d5334e2f06d *R/bed_matrix_split_genomic_region.r
50a5c208ae579413130594e0915077d0 *R/burden.r
429455bce1f7290cbff8c7a6a5ca0496 *R/burden_NullObject.r
f618584ee272050625e46f5b86d8b602 *R/burden_continuous.r
48ef897d8fcee0535279ad2a87612f26 *R/burden_continuous_subscores.r
c452738276ac4b20308a2009683cb355 *R/burden_mlogit.r
88bdd477b3348083511ad8c68c774e6d *R/burden_mlogit_subscores.r
b719431d34ac662d95acf0ff5c6f79d2 *R/burden_subscores.r
223cf3dbe12f793678c029af02edcc31 *R/burden_weighted_matrix.r
a7fe5fecd2c8b398dcec751ff4801e58 *R/filter_adjustedCADD.r
b2ebdba819278f868517b6e9d9219eec *R/filter_rare_variants.r
6c059f9fae805a0c3a7fe529317a8dae *R/genotypic.freq.r
b1f1eac2cb22114337e752d896fbb712 *R/get_parameters_pvalue_theoretical.r
66a985a190532d8605cc84ced8edf4f7 *R/get_rbm_thresholds.r
ba34248bc9a2d0e157af35f92de85427 *R/globals.R
a5544fa6c94f8dc03677f5c46fdfdbc0 *R/jaccard.r
18efe1f2141cadef12d8cf8877a06112 *R/matrix_products.r
c6fd697e7c7de0e11ec002b39d3cf22f *R/new_bed_matrix.r
d8ffb166094804a8391faef2bd4017de *R/or_matrix_fix.r
08caf891b9fd9c1464ee3a77d55cb019 *R/or_matrix_fix_same_variant.r
b9361ab4ef642d155b8ad54cb460487b *R/p_valeur_moments_liu.r
a8a05d4f166b169ab1ecf5bcb2edd0a5 *R/random_bed_matrix_freqs.r
2977a1ab528530143ac9c66b24495df5 *R/random_bed_matrix_haplo.r
de8766e445e720dd7364ebd073e785d2 *R/rbm_GRR.r
81d1bf286e2763f439d6fb53c4f523c6 *R/rbm_GRR_power.r
2fbde9c8079a60a11214d86507babe6b *R/rbm_haplos_power.r
7245754f7b483d71dc90a1a70dfed231 *R/set_CADDregions.r
8f886b6c875742a6e92c98cb6b474b87 *R/set_genomic_region.r
f65e783286eeec9f7f236b9ad0d943d7 *R/set_genomic_region_subregion.r
6f0661dbc991062419b64f5429b0b079 *R/sum_fst.r
940cb1011eeb9f39c4b579be30ac2e19 *R/zzz.r
ad9a33e406b8b18fa75a3b14c713fa24 *TODO
67f778035a0f10a9a6af7cb9d992ab51 *build/vignette.rds
22b409117d530d9e7af3a43aa30b2688 *data/GnomADgenes.RData
17791ae871bc011907cb10f3d9fe51da *data/Kryukov.rda
00dd23ea8b50bf48e83a3dd7fc1beba8 *data/LCT.haplotypes.rda
8621f6ae992dc6b3837c67733e1f6119 *data/LCT.matrix.rda
61e8e015a4cb319f34ccb0d8d4125958 *data/Subregions_LCT_example.RData
a04cbaca21d519aa4478a133e54674a9 *data/datalist
a2109df32588bdbf93586e044c4b3e94 *data/genes.b37.RData
0ec5a05e40a93d6fb6ed0a6cc781951e *data/genes.b38.RData
a9d5afbe4c6129511e212c80b61714c9 *inst/doc/Ravages_Simulations_vignette.R
d2c6edd089e91e0dde00c8607bce3e39 *inst/doc/Ravages_Simulations_vignette.Rmd
ab73460b526575ac55a621d8176dccbc *inst/doc/Ravages_Simulations_vignette.html
13a1ac861478ffcada4597841c51b22b *inst/doc/Ravages_vignette.R
3460cbc085f73b83eeb2dad0ddac8661 *inst/doc/Ravages_vignette.Rmd
b895e057751638a2a709775c0204891b *inst/doc/Ravages_vignette.html
b82cb78aa0a2243f64b4de6362fa2e71 *man/CAST.Rd
499a5c44dd2b4e9e21770cce16c935c4 *man/GRR.matrix.Rd
e748dc50139dd96bde42c8d8d083d022 *man/GnomADgenes.Rd
b0ce6bc3dbda4f516bdbb45ff593ca6b *man/Jaccard.Rd
d660c513320d9562d821256a0ae357ee *man/Kryukov.Rd
6d418e81535a3c7b6f9c57c51fba8c9c *man/LCT.haplotypes.Rd
da0c83dd3c935c389cd9c8e0c4fdc83c *man/LCT.matrix.Rd
28c8c6d84351ac653c79b6908d385852 *man/NullObject.parameters.Rd
b78eb3fa7ff156354f8cadc98e162723 *man/RAVA_FIRST.Rd
df27aeb17d1d40cd6bfd0ddf348b0841 *man/SKAT.Rd
6f97d8284d83d518e4f78244bee37748 *man/SKAT.bootstrap.Rd
d5cdce206723063576371e34a1fdad74 *man/SKAT.continuous.Rd
3884786e9586b9f0fbe76b3cd2e6b462 *man/SKAT.permutations.Rd
4548234875e3a74d4507f012d1535dae *man/SKAT.theoretical.Rd
2d9f2484af41ba8f5ff898f366ac9b85 *man/WSS.Rd
8cc5fe018877ca88a04cc8cf0a69203d *man/adjustedCADD_annotation.Rd
c6f2d90b42ebc9ccb01bcb723e279f1b *man/bed.matrix.split.genomic.region.Rd
901692deeb283abcf4db726602b4ee05 *man/burden.Rd
e11243cb83c6ff58df89c7e1ad18eb62 *man/burden.continuous.Rd
a920d4b9ddfce5bf350fdac31b4d3128 *man/burden.continuous.subscores.Rd
9024ebe813854c317227ababc8f9dccb *man/burden.mlogit.Rd
f3ee751d43d3af7d0776f31c18a1dd2b *man/burden.mlogit.subscores.Rd
8da50d13cee39cacaa01e098c38e6671 *man/burden.subscores.Rd
5da392b12bf99a955bcfded444b1fa92 *man/burden.weighted.matrix.Rd
2e42462efc51c6db8a496ba4968464d7 *man/filter.rare.variants.Rd
59015da12925e23253cf39963028c89b *man/filter_adjustedCADD.Rd
7c00bab3f7fd3d8abe2b5ba25f65460d *man/genes.positions.Rd
2d9607aee662f9abb71754a6982379f2 *man/genotypic.freq.Rd
b3d3df6cb15be68c5c4418df03d6fc12 *man/rbm.GRR.Rd
fef10bde97b1c4791d95918ddd273fb0 *man/rbm.GRR.power.Rd
277d6a815d29b6329b14fa9f06a3c1b1 *man/rbm.haplos.freqs.Rd
9d20b4d0c7887ba2518e4e335b2142f4 *man/rbm.haplos.power.Rd
4b306c25aa1a2f5474dd7906d3b2b1f3 *man/rbm.haplos.thresholds.Rd
75aa8ab5031a76a2f1e303a7369476a5 *man/set.CADDregions.Rd
0c58a96bd0ab08e2925cabd94786eaa9 *man/set.genomic.region.Rd
fc03e5c60d6a61cde1857d4b2e8021fc *man/set.genomic.region.subregion.Rd
bd37b7981f26bfbc499d69362af9f0c0 *man/subregions.LCT.Rd
81beb60f26a702e7dd487477a1b6328a *src/Makevars
e3d3cb360fbfdb3c6974e14eb5f09870 *src/Makevars.win
866cabc91895020cdd6ef7e382a0320e *src/allelecounter.cpp
fa91d4aebf30b27a7adc7cecaf4a89b7 *src/allelecounter.h
d630639a623d4b5395b5c9c607bb8a20 *src/allelecounter2.cpp
875acda540146ad327fde3349686cadb *src/allelecounter2.h
85a8f0d653dc078401e69aa362b33152 *src/alleles_by_group.cpp
de71d24837c1840b71331e674000d5cf *src/block_diag.cpp
fb5da6185035214101f01503dbea151f *src/burden.cpp
9416560ce670cf0d82c488b2c9446166 *src/colsums.cpp
2d29f9981e98873b70d3f598cc17b56b *src/count_alternative_alleles.cpp
0002b170814ccd09c59136e30b401863 *src/itere_combinaisons.cpp
7ba1b078f78aba636e943712633e366d *src/itere_combinaisons.h
00631598beb89b3b79f73ced5813b01f *src/jaccard.cpp
9d3211bf481847409a9cebe26ecbd773 *src/label_genes.cpp
470d5f7b18fdc415a300ab874d8096da *src/label_multiple_genes.cpp
33221db4906b3e1e0adbebfac189dc09 *src/m4_stats.cpp
e3ab65750807a3131faee07560e7b47e *src/matrix4.cpp
f7a6c5393fe0d739a72e2932ae5f99ec *src/moments.cpp
d6cb5b42930089eade1d07e54d075155 *src/polytomic_haplotype_proba.h
a6fb36654d733f0eef09183395eb45c6 *src/random_bed_matrix.cpp
38b3fb2b0f74f9161e02838ae0dddb5d *src/ravages_init.c
1daf5700d4d5817329b95d2265ac6d62 *src/rbm_haplos_freqs.cpp
481e7db3961eced6e49127ecc9b2278d *src/rbm_haplos_thresholds.cpp
ed463dbbdd3d0c2adaa4157ed9df906d *src/rbm_haplos_thresholds_filling.cpp
f6729ce16cf5df0d63ee3814752cdcd8 *src/skat.cpp
7ee3a3ccb84cb826a5fb53c1c84ce309 *src/skatBootstrap.cpp
3eae8abd1577c79e5f5df735079704a9 *src/statistics_class.h
68b1536cb2a74246126c0d72e8821f40 *src/sum_by_group.cpp
74105b5d380486b52ab8c3cf35ab9e0f *src/sum_fst.cpp
5a0fbcba6dc721f1326b4d8463747e97 *src/sum_fst1.cpp
8ab42eec1af828be038bb7a3c125e82f *src/weighted_left_product.cpp
7bbb3d3ead15164e1b449e8ff154cfe4 *src/weighted_left_product.h
d2c6edd089e91e0dde00c8607bce3e39 *vignettes/Ravages_Simulations_vignette.Rmd
3460cbc085f73b83eeb2dad0ddac8661 *vignettes/Ravages_vignette.Rmd
