a2cefba01c40285a11e38d6ccd6cdea8 *DESCRIPTION
6c90761efba763dfc38131f0bcf28870 *NAMESPACE
d6904c6eac7f83723bfc1c12a088dabe *NEWS.md
33636dd79000556aa17ab2b86f4929dd *R/adjclust.R
d8528b56095bcb847d00096c313c3dd2 *R/buildHeap.R
00d9074f3ab04bacfe28a1ab40d85cff *R/chac.R
724d3beb652e3932076d96c0f7c20d5c *R/helpers.R
66960302a798131d8112678d52f0769e *R/hicClust.R
50aae6f8a5730dcc0b6df0766b9e87d7 *R/plotSim.R
a792d9b057d8234e40603a684b1e05d5 *R/res_adjclust_0.3.0.R
c1f2b84f6fc27aa5868f2fea319252e3 *R/snpClust.R
327f325af7abfdb5a0bc438f2c6e8fe1 *README.md
f70a18354aea3ae3bf4812548ba13b10 *build/vignette.rds
d35fd6b35cdb510465a49e72d7301b6d *data/res_adjclust_0.3.0.rda
e776d065e57fbdb57e09f4cc88c052c7 *inst/doc/hicClust.R
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967b6c223c10ad76ae60336ec894b0e5 *inst/doc/notesCHAC.R
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dd6726c6c4b30f3cea804183395128eb *inst/extdata/hic_imr90_40_XX.rda
bd492a22b4201740430f97be6b6c45fe *inst/extdata/sample.txt
abe469addd68c05b93241b7ddf51ab7f *inst/system/createExampleLDData.R
8a7f67643f909f889d8f2efcf825ca00 *inst/system/create_hic_chrXchrX.R
ab247bcc85e5b115f6bb89fbde548770 *inst/system/create_prevfit.R
2d7fdb78afaf425e7a47ff51e3f21bb3 *man/adjClust.Rd
4ce8a78f63989d15575ab7261f1b4a31 *man/chac.Rd
ecda82d4680c354b688271bee09f7a05 *man/figures/README-adjClust-1.png
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31854455a3fdcbb22c833a46a842991e *man/figures/README-snpClust-3.png
e5f0055fd2c47a817b2c8106cf0768c7 *man/hicClust.Rd
795dc311481bab06858472c9e7432a24 *man/plotSim.Rd
bc3c7f071da065ead847e1a6014fade4 *man/res_adjclust_0.3.0.Rd
042a76afee52dc74a54ccbe2b45e3781 *man/select.Rd
4ff32ddea48266683d37a6e621c52029 *man/snpClust.Rd
18cc7f742ac241454e9304dec5b2a992 *src/init.c
6d5fc09b353b9419b5a16dd7bec849ef *src/mainFunctions.c
4543c7812c549c8a643d02ecafc49922 *tests/testthat.R
60ebfae526b756cb16177880c5ec923c *tests/testthat/test_adjclust_equivalentTo_hclust.R
a4c3cf091085dbde0fe8f8d4b7802b49 *tests/testthat/test_adjclust_equivalentTo_rioja.R
ef077a64b5539333537c6a5135151cee *tests/testthat/test_ascendingCompatibility.R
50890608af7eaa7761a1d9efe54ea345 *tests/testthat/test_correct.R
fa543492bedb98ec315e98b317f285c4 *tests/testthat/test_corrected_plot.R
78eaeb6d28387bd4d1c95b688599fc55 *tests/testthat/test_cuttree.R
8c5cc3df79ef094c08e65f1394426cdd *tests/testthat/test_dense_sparse_comparison.R
9b2f0669edd88e5c6b293049591e0648 *tests/testthat/test_final_height.R
47be43fb387eff30329bf9145597fa8c *tests/testthat/test_hicClust.R
4826d53a15ac23626822a9ca4db4711d *tests/testthat/test_modify.R
8f0f30e67424af6384864ef2cdd57640 *tests/testthat/test_plotSim.R
9b66bf636b6e88e9f59ecbcb6e882d6c *tests/testthat/test_similarity_equivalentTo_dissimilarity.R
7ef3f5b76202a5745a3fda5916a74c12 *tests/testthat/test_snpClust.R
1c6cc62e2f720ee9e4909215fd02fb44 *tests/testthat/test_snpClust_NA-in-LD.R
54de6942a25f58ddaf55fcf0d7a851d3 *tests/testthat/test_warning_with_decreasing_height_plots.R
4cd6a4446bdc1bbcd0ef457356fc4862 *vignettes/hicClust.Rmd
f580a3d56074ab2aef3a875c8fa05dcc *vignettes/notesCHAC.Rmd
a20325999e966323288f9f4c35d23c2b *vignettes/snpClust.Rmd
