3e3aed980babc3def9fc8afb5d0a65a6 *DESCRIPTION
95a6567b025c7f17ff22eec12e531526 *NAMESPACE
48558e57bdba209cae6a134f80911bbd *R/EFetchLocus.R
786c38d04e8a0d384f39b1f318fd6864 *R/MAD.R
a9d4e41467bd0c9ad5483ee37659fb40 *R/NCBI.wrap.R
fc8e7e2e3b74cc74db844f3bc5cb5b6f *R/addNbAcc.R
b5b41feced1455a8833b8f3fc960c151 *R/addTip.R
0da22490035327ac468070c2f7a202c1 *R/alignGenus.R
9d4cc4105ebd561464ec941812553677 *R/calcDistToRef.R
c895d3c9137988ae48465b6447331d6c *R/check.Clades.R
c610bd26dfe216598c7c24b62172f478 *R/check.Coverage.R
06b3550f5f2298d63fdd184d57af0dfb *R/check.Markers.R
3f8136abba8feece2c10786fa73c0676 *R/check.NameChanges.R
285d072dda773a0ae5d32e36f89cd25c *R/check.Species.R
a45c51cd591c8358e0851f47beed5c38 *R/check.TaxAgainstPhy.R
c9c7fb32411e1d614676e8c952facbb4 *R/coverage.R
9dad9c8e2b7bbd3e2090de4bb7a56fe0 *R/dbAutofillTaxonomy.R
87dcc5d7f95cf818d3c2ffc0056e211e *R/dbDeleteSpec.R
dc4ea6ea4afcced33d7ddc838218ed16 *R/dbPars.R
d8205ccd165788178b33fb3fe207b194 *R/dbReadDNA.R
6dad0ba7b85b17788d36db5e078d17f9 *R/dbReadReference.R
adfc74497e5b4192b818adbc748429de *R/dbReadTaxomony.R
c4bb63d99156752cc75057dfc6bb3095 *R/dbUpdateLocus.R
1d694d672cf192859c1ceb16364d14f3 *R/dbUpdateTaxonomy.R
498622834c18a4f1ea955ae390200d03 *R/dbWriteDNA.R
7772cac5fee3967939b9f9757b5b0d11 *R/dbWriteString.r
94d087225730331de5d15c867d0fccfc *R/downloadSequences.R
720051a59f3cf97716dd4c3992306f14 *R/esearch.R
bd1559c454e178a22cc19fb126b2f89a *R/extractLocus.R
0ef7a14bb085049f8db73646f671334f *R/filter.alignment.R
7e8ea880a587fae85d2e450b2dcacebe *R/fixTaxonomy.R
f34603e1877ffc4c2193b0e809cb8b18 *R/fleshoutGuidetree.R
899486c798287f644f981239f4382d5b *R/funX.R
438e9ff9a203ca84e83efd680e2ab1e6 *R/getLineage.R
96a37217d38151205a4a98ee951a4d5d *R/is.alignable.R
05aa91a37cd609f97bec285e8c10a024 *R/locus.R
36f47fc7afe5b3360398814ccbb1cb06 *R/mafft.merge.R
43e2cbe34a3844b94192f596e64d26c7 *R/markersGenbank.R
8ee75eab357a95a0947003ef1963e992 *R/maxDist.R
0c10569fb1d6b90aec1a4aae7c223652 *R/meanPairwiseIdentity.R
3a7285842949c7621ca91451eab4ec08 *R/megapteraPars.R
a988f7ccfcad6e1661f54a5dffe3fd4a *R/megapteraProj.R
979cbb2a17ae81a25c5ee4c07e944214 *R/megaptera_heatmap.R
8c9737677a3b5c377d86740568c714bf *R/myDist.R
6daa04c9154670e3d7ee3d44b2216369 *R/ncbiLineage.R
3a5298c1c14cb68a3a0d81fc87438640 *R/ncbiTaxonomy.R
9c6833936d3ef669d0135c78b293400e *R/nucleotideOverlap.R
de64b49214edc4f858235343fc9cadf6 *R/prune.phylo.rank.R
4a2a54e49d442fb57bed27bd533bcf58 *R/revCompTest.R
e33d00ed84d8bd86f6f9b157c232d595 *R/slog.R
72e7968dd9780ff8df9e52c4b96e8d39 *R/sortRanks.R
f67ead5593b7796f679c175c7945258c *R/specCons.R
77fbc80ac283b790fee6abd80e0f587e *R/speciesConsensus.R
ccb08a0a4fd21e7eb8f01defaabf2bae *R/splitGiTaxon.R
9c0bfe88dae41035b93d82d938eeca11 *R/sql.conform.R
da08c1da1469c25479e6d18d835ab589 *R/sql.wrap.R
2930c9ee1d8239713fde29caa059d675 *R/sqlTaxonomyHeader.R
8faa34c7d41837dd7e0087eb60b204f1 *R/stepA.R
d52bb04309566eb59de98554884a8717 *R/stepB.R
c571da0e3a4925704c580e798a5bff50 *R/stepC.R
f1c559011a25d937155d1b5dea4a2adf *R/stepD.R
9f9d5608cc3461cdfd1e763c82d02a1d *R/stepE.R
4b86fceca9327964c59a06f40a99b065 *R/stepF.R
88d834c57530bbd08ef82db9d83a34da *R/stepG.R
c325e8d611695fdb81baf383666e2cd0 *R/stepH.R
21b5be601e2db3399ad172845daa8249 *R/strip.infraspec.R
6d1c968a7430cbee1ceca24311bd51a6 *R/strip.spec.R
343524b9710043e94345be91f6b4eb0f *R/supermatrix.R
aca5f9ae1fe8a2b3b50cb3a88e0c9c3d *R/tax2tree.R
c103e729936acc2deaa410ae2be3166d *R/taxon.R
8f5eca0c280d8437834b832522004042 *R/term.R
3d90307fd26718a2f7f5453e1203d0c0 *R/whereToInsert.R
4c4533140cbf7701c87075c56ea21e98 *R/write.dna.spectable.R
d4417e83c58fb0f16d7ffd2fa6227728 *build/vignette.rds
536d055a97992ba61844b8119354ab4d *data/NCBIeaa.rda
fca17fc47d7990b3649f6b36eace1536 *data/cetacea.rda
ef33d2859b6753e69f684c416f2bb415 *data/input.rda
b5d74a849cba3e7c7e47db7ff6597254 *inst/doc/Getting-started.pdf
0ba17b221c72c2683ea8389075bb80a1 *inst/doc/Getting-started.rnw
92eb780cecc6fecf296e06109175a44d *man/NCBIeaa.Rd
315abc42430e84f0b3937a45295da5a4 *man/addTip.Rd
2db24e84fb95999509024ebb31205d55 *man/cetacea.Rd
5a67e67ec729f3554e146e1a35bb9972 *man/check.Function.Rd
3aeffee7d45bcb5701c9893c15bf7d86 *man/dbPars-class.Rd
2a1363e484830a4b6d9ff8e230ac2d89 *man/dbPars.Rd
e0b4704c047c52f5115e86974d2cc564 *man/dbReadTaxonomy.Rd
9ac9b2f87e39f041c0450397b4a06fdd *man/dbUpdateTaxonomy.Rd
9433a79ccbfd43e5b938090097b91d30 *man/fleshoutGuidetree.Rd
cc891c29089f309a8be0816fa61a4413 *man/io.dna.db.Rd
eb29477f635b2ce4a5eaa7956d2e8ee5 *man/locus-class.Rd
5806678388ec51384827a7dc599ec8e0 *man/locus.Rd
0cd50c7657d9b02ed75948025bd55ada *man/megaptera-internal.Rd
3c20241fc0f31a0e87d600ea46e3c8b4 *man/megaptera-package.Rd
bcffee8df4c4096d46f9f390d1de80ba *man/megapteraPars-class.Rd
92f6c5a1cdd8ae4c8fc27c2bd7c7d642 *man/megapteraPars.Rd
760806a74a7ce058d5a95e4e5ccf1d51 *man/megapteraProj-class.Rd
6db1da549850bd9aa4fa18d860e658e2 *man/megapteraProj.Rd
106bef8a86b94f9099c3976ff99fed26 *man/ncbiTaxonomy.Rd
d4da731131c18d024ea7b4009fc83ded *man/prune.phylo.rank.Rd
9c46f3adcb0a7ae2bab89681be5f15e3 *man/setLocus.Rd
952b16f00d8c07d43a3ebda87dd2f6cd *man/stepA.Rd
31ea4fc056c939065a2d0d48727a16d9 *man/stepB.Rd
3c7a2b6dfacdd13df32faf11c5c61d14 *man/stepC.Rd
39c9e7611bc109dc58d530fd70cc14f6 *man/stepD.Rd
62b72235fe55fc51c0d65fef3d580159 *man/stepE.Rd
80dfe7f151d3a03e062acd1677518f9f *man/stepF.Rd
b8b0ff9d20f2d3395f2339588795377c *man/stepG.Rd
5c80b9116e16a058408e754e6cf1d62c *man/stepH.Rd
1871697f9f30305ab9ea98c203362dbf *man/strip.infraspec.Rd
6cf13af3dfc61d6a416231e22ca0586e *man/taxon-class.Rd
87ea7bcb79f08fc988c86b53a4426b92 *man/taxon.Rd
1e64525ddbb9ac19b002a03ae12c7f83 *vignettes/Getting-started-concordance.tex
0ba17b221c72c2683ea8389075bb80a1 *vignettes/Getting-started.rnw
f023eb3b1bd56bc5c1480431479542de *vignettes/biology.bib
1e545dcdf6ef2b91204ca1b717455fb4 *vignettes/jbiogeo2.bst
