2d72aa5efa2d880dcc45fe7477477a72 *DESCRIPTION
94114ad2153cc4550fbb853dde3ac191 *LICENSE
40079e5994eda08b1ff167fd75a094e2 *NAMESPACE
02384ea7a68995193df89bde630f2b87 *R/alternative_pickHardThreshold.R
6fccb0af9106d8b5d3efe83018c9c26a *R/checks.R
82eff520cb6df4d5fd25652ee4294183 *R/data_documentations.R
c436f34cf6808bfb90b3d539e6b378a6 *R/drug_targets.R
8fe294099f6896de88f5b56828a614c7 *R/graph_combination.R
e3160ba8e6d15d0d87a78a1bf7d9a860 *R/interaction_score.R
d95a58d3b2486673000983808ba4f229 *R/network_generation.R
da198b78f2f22b77adb579ba2342c9a2 *R/network_reduction.R
a8b19049a17ed0d70035660bb2193ecc *R/pipeline_functions.R
ff3758d4763b9b1a25416471aa192478 *R/settings.R
ac7e02e319c41344024795c81443e091 *R/utilities.R
65cef5e0674056f6fc07dd2b3ca85c13 *R/utils-pipe.R
ca02927df7938a8ccd455d047d81d659 *build/vignette.rds
95375a1bca19c6cd6d3aad4c69406983 *data/combined_graphs_example.rda
2fb8b3c25f4e356471eaed4ff02b9bec *data/differential_score_graph_example.rda
f124b1eeeb52b62a632a98e679ac593b *data/drug_gene_interactions.rda
33da5b5eb8c3245f9e1f1e4b726446c3 *data/drug_response_score_example.rda
45adc4ba4eb239f955eb74370da04863 *data/drug_target_interaction_example.rda
1c7a53d78581eff08510971d063b006a *data/drug_targets_example.rda
7d5800bcaee6a9221d045a8faf6d5e81 *data/individual_graphs_example.rda
6a53d9d4db54cb9c76ad7f4285926d74 *data/interaction_score_graphs_example.rda
9058b3cf2d3fa735fbfc7e22874970be *data/interaction_score_graphs_vignette.rda
53c59a9e6b48a8fe73b3ac352d1b93df *data/layers_example.rda
999374f27465c0a28f442b767ba3c597 *data/metabolite_data.rda
71d4bbbc269f76141a74361b8f018fb4 *data/metabolite_protein_interaction.rda
daea360c13485c837f1794fd88e9344b *data/mrna_data.rda
9cd39d88f8d3cdac2123ca1c156ed0e2 *data/phosphoprotein_data.rda
8ddba8127ab9469ae0554fede456629e *data/protein_data.rda
e5c45bb972d7214cb31377189dc66179 *inst/doc/Molnet_Vignette.R
e503b1d72aa2b7681e207417ab215121 *inst/doc/Molnet_Vignette.Rmd
6faa014a17f5367aa282c87fb5ba0e5d *inst/doc/Molnet_Vignette.html
d068db9438d56f2bbb4db7743fe5acbf *inst/python_igraph_interaction_score.py
0fbba9dd571590e415779291f504e365 *inst/requirements.txt
8be3c34b172a6f15d335a313e06fb673 *man/calculate_interaction_score.Rd
d5030a3fc39f32d91608056e137477ed *man/check_connection.Rd
84d03eeb1236bc5fc4bcd0e6c83e7ff8 *man/check_drug_target.Rd
031704f29cd2aebc584816184c9f86bb *man/check_drug_targets_in_layers.Rd
5f6d72bface24729b689e277ba8b42c8 *man/check_input.Rd
620b9cc4c6abf43e1aec6befd1537985 *man/check_layer.Rd
56aae8ba5ad98dd1609276859db8fb75 *man/check_sensible_connections.Rd
d46b0170c2f4581de83b850432974bc0 *man/chunk.Rd
6cea5b869ad9dea17fcd56d187601d8f *man/chunk_2gether.Rd
5cb2d98e9822ed6057187289ba8e52a7 *man/combine_graphs.Rd
92a6246585183f12da632081988080a4 *man/combined_graphs_example.Rd
7be4dd95a918dd403a93325e963cae58 *man/corPvalueStudentParallel.Rd
dc048806f7c3b6ed70875faff7a33454 *man/create_unique_layer_node_ids.Rd
13bce4d3fb2072236b2a81f2b3340f7d *man/determine_drug_targets.Rd
32e5607bcb514f64e95b6e90f66b871d *man/differential_score.Rd
248f63a54e9a716b083de4e21b4f5b28 *man/differential_score_graph_example.Rd
4755351e25d0217c5d15666803eaa824 *man/drug_gene_interactions.Rd
0bbc9f4ac3ff0cb5a42ca5afdb9baaec *man/drug_response_score_example.Rd
547048b3f1eb09950edbf43f962107df *man/drug_target_interaction_example.Rd
36ecbc7ff7b7231ebcc8071cfe820fcd *man/drug_targets_example.Rd
d7c46a5fd350c9f38c695f42e313b7e2 *man/find_targets.Rd
afb9bb9ac76388a917652ae490ec00dc *man/generate_combined_graphs.Rd
553152da77af997eab4c43c47281454e *man/generate_individual_graphs.Rd
0d6babb10d38e04ff74de6c41b080962 *man/generate_reduced_graph.Rd
de423837c4b5b2530a55228a28158dc2 *man/get_drug_response_score.Rd
9f0e0cb707c274530fd97339188e4aff *man/get_layer.Rd
7dbdd38bbdb231ed67ea1c7623c2449b *man/get_layer_setting.Rd
c96767bf1eca4c4bfda115d409e51767 *man/graph_metrics.Rd
3c30d72af2fd8699d3afd7cf2597295f *man/individual_graphs_example.Rd
812f6d3abeed613513f6a44cda6bb277 *man/install_python_dependencies.Rd
20a5bdf9f47ce491848694aee552f0b3 *man/inter_layer_edgelist_by_id.Rd
1648c671262aaa835e091eeeacfd45de *man/inter_layer_edgelist_by_table.Rd
5fe9f8966b44304a6a485add06a931ca *man/interaction_score.Rd
438958a0158d254670ead68c7b13332d *man/interaction_score_graphs_example.Rd
066d48b9220f5fb16ad12022d107d0f9 *man/interaction_score_graphs_vignette.Rd
cd284fe2231ca7ad0fdec3555fb69b35 *man/layers_example.Rd
bf21c825a11f113850a2ee1adcf9f9da *man/load_interaction_score_output.Rd
727a4dab3e58f7a50900320e9b5c3b81 *man/make_connection.Rd
f4200bf69601ddb7f28693e0d279b7ce *man/make_drug_target.Rd
f7cf554d37e159fdf91695a9b8acfa35 *man/make_layer.Rd
62e80aefbc8b5bc53d16977973c41548 *man/metabolite_data.Rd
5c1bf43f3ae7bada2d423a93bd0fca08 *man/metabolite_protein_interaction.Rd
7d43414b4b16df498e58a2b55d400a44 *man/molnet_settings.Rd
d48d764eb311a04241522049a74c1ba4 *man/mrna_data.Rd
8ccecf6368e4b0193fe47f119e1c8c16 *man/network_reduction_by_p_value.Rd
2cf2b14e1aa05044dce512623f610f62 *man/network_reduction_by_pickHardThreshold.Rd
6485900e667de8d584ca43d9aebedcb8 *man/phosphoprotein_data.Rd
450b557f57d606115336c635821d2cda *man/pickHardThreshold_alternative.Rd
4894ca10756199e25f914bfd34f517b0 *man/pipe.Rd
e5a7c8c9bb9cb88da8f348473d3f196b *man/protein_data.Rd
9ef5fa0f278071cd57c45176d355ef11 *man/return_errors.Rd
9fc53fd567c36f4eadf510c70f07167c *man/sample_size.Rd
f1769c492e42d3eefa516c063e4ab9f2 *man/scaleFreeFitIndex_alternative.Rd
5d2f70143cc0a778074d0fbe7bf7b70a *man/set_cluster.Rd
ecf0b5e0f577c9d9e02fb1bba91cf0c6 *man/shutdown_cluster.Rd
47b6d5e0a1a59b495948ef091e96e72e *man/start_pipeline.Rd
710d5f7c9d41fafd8df1a30c518ebb6f *man/target_edge_list.Rd
5d087274b60c7c6dcf923fe641fefc04 *man/write_interaction_score_input.Rd
e503b1d72aa2b7681e207417ab215121 *vignettes/Molnet_Vignette.Rmd
c9349276a94bdef80e637c72b719fece *vignettes/pipeline_bpmn.png
4eb15d4a4f3ecfb0d5826a01a8c5e6e8 *vignettes/pipeline_overview.png
