d2dbfcf1e07e178757bc9c100dbe2aec *DESCRIPTION
231dc3b92ee4071e16f2939624fb1b43 *NAMESPACE
336aa56fa0b0570c48565578de519a43 *R/s01_all_classes.R
7ade12238c4b3ac63d4b9e1ad5f7693f *R/s02_all_methods.R
ae0cf229d9eef9fef15a5d5791e80038 *R/s03_all_functions.R
c222424868512f779bede842106e7d66 *R/s04_all_extra.R
d7df916109a8d88690c062bca9735218 *build/vignette.rds
3972cba2aa82c17c669e587d34803d28 *data/mutSigData.rda
08c9342e8b6a5e7027317898c35f3612 *inst/doc/get_sarted_with_mutSignatures.R
f83cc0a08947115caea3cf3d537c9279 *inst/doc/get_sarted_with_mutSignatures.Rmd
2728c45e1989f8e2e750564c7924ea9c *inst/doc/get_sarted_with_mutSignatures.html
b7d749f80d21e7804ae27f27e01d7296 *man/addWeak.Rd
3505608c6cbbbf632b4f23139010006c *man/alexaNMF.Rd
6ce3915d60edbb68418d907c778cc690 *man/as.data.frame-mutSignExposures-method.Rd
b47f86dcd4f5f00186794750469967bc *man/as.data.frame-mutationCounts-method.Rd
33db63ed4024885070a41ea6b13c01d0 *man/as.data.frame-mutationSignatures-method.Rd
fbdf1976b13b771a9be78ad5c0365fed *man/as.list-mutFrameworkParams-method.Rd
c530fcc8b95c40452f7fc1faca833320 *man/as.list-mutationSignatures-method.Rd
c630f95da5fdc154465e7c90ccf72b4e *man/as.matrix-mutationCounts-method.Rd
4ca09f495d057a76dd5b937b1a66c44c *man/as.mutation.counts.Rd
dd6a3321d4172dc13e17feab2daa080a *man/as.mutation.signatures.Rd
bafb045b226251016b0d4bbf561e13bd *man/as.mutsign.exposures.Rd
1ea22ccf50a2c4df29ac8cd0ccc3a437 *man/attachContext.Rd
1828923b6aab2ef072b37bac6515256d *man/attachMutType.Rd
ae2420b88d9eb6bf8f89372b2e304742 *man/bootstrapCancerGenomes.Rd
a75186c0adeebbd51ec02e9cecfe856f *man/cbind2.Rd
c2d21e01626b4ac006bc4065996e53b4 *man/chihJenNMF.Rd
4cc249343d1215932e2b1b0d3b245576 *man/coerceObj-methods.Rd
c056c81d45390508a971e3a018474537 *man/countMutTypes.Rd
9cbc87cd5b50c827351e69eea14affb2 *man/custom_cssls.Rd
fec31c0dd70945ae0b1b01998b580300 *man/custom_fcnnls.Rd
1e9b2718b357e7ee42dbbbfad44440f5 *man/decipherMutationalProcesses.Rd
dbb41e1e85e112142b5e3ba5726dfb02 *man/deconvoluteMutCounts.Rd
f7c45ae3b126a2a01d769ed1d282d63e *man/evaluateStability.Rd
7c936874e5346277b6e0398366e81a80 *man/extractSignatures.Rd
ae4e193359440c66bfb203cb9dc01752 *man/extractXvarlinkData.Rd
3a950f0260ef8217fe28a95e021785e2 *man/filterOutIterations.Rd
aa482810c2d06003a5665f1c2abdadbb *man/filterSNV.Rd
c0aebb74b7e9c262ddf4149fd96767a2 *man/frequencize.Rd
a2d5179bb391ab01a6b852781a7f4f50 *man/getCosmicSignatures.Rd
a375ca6f7cf66eb73d9d9dce87d198ac *man/getCounts.Rd
a62b707e61e6a91c126ff278fa21b0c5 *man/getFwkParam.Rd
4acddc8d624b1cf4f9a19062725fb105 *man/getMutationTypes.Rd
60566da4d7f9de1c79061d7d151613f5 *man/getSampleIdentifiers.Rd
63aca8833ab1d0b9840ea5f0da6c211f *man/getSignatureIdentifiers.Rd
9cd46bdbd9d399091f73ccf5ec2d5cad *man/getTestRunArgs.Rd
d9281f4190b31a7a313e89179e102572 *man/importVCFfiles.Rd
654952151b5e9312d8fea5be867a7782 *man/leadZeros.Rd
002fdf8a64f1b8c44c61ec0ca2ff8b52 *man/matchSignatures.Rd
a1ba82949aa9f17ca6c0e8282a8c241f *man/msigPlot.Rd
1dd8b4ae6a5b9df6767175aedf555d1f *man/mutFrameworkParams-class.Rd
2f0ec5b24acc34d8f938e4c3dc3b872a *man/mutFrameworkParams-show.Rd
868f3875edc6a59a1f420483903a0b56 *man/mutSigData.Rd
525a437afd64e91d9829ba8f6bc6f09b *man/mutSignExposures-class.Rd
2748396117fbc0e559f14b042af4dc1a *man/mutSignExposures-show.Rd
60a866460e578c7ddadb9a6ff91629db *man/mutSignatures-package.Rd
98a32832dd7c20149e96e88e57c95ebc *man/mutationCounts-class.Rd
8d7a139dc560199195fcb2afe6cabfd8 *man/mutationCounts-show.Rd
b2c832f3c70b6848b782c7b26b1fbfcb *man/mutationSignatures-class.Rd
3306e2cdd92cc4285b78de6cfad5b118 *man/mutationSignatures-show.Rd
ca1972fa6a2bcf10d45a9272f22ce6f5 *man/plotMutTypeProfile.Rd
0d413abb148232c268276db01098b11b *man/plotSignExposures.Rd
540a4eea6f6a83ce4473b3773cfeeb60 *man/prelimProcessAssess.Rd
a6cc1e6d0b5659ec3fc0a1266e4a77af *man/processVCFdata.Rd
d42ea753fefb0d8ea470c00a7133fd13 *man/removeMismatchMut.Rd
f599f1446ec5051bb1887452862c5dad *man/removeWeak.Rd
c59411e37fe5d24e9f468aeb230c56c5 *man/resolveMutSignatures.Rd
62ee05e22597d690385a895429b7ea4f *man/revCompl.Rd
4d990de7b8780345af5752c9b3684101 *man/setFwkParam.Rd
dc77d7236a3d3ec106887e96332c7d90 *man/setMutClusterParams.Rd
cba2459b71cedbd4ed536027458c6ef3 *man/silhouetteMLB.Rd
cbe3f64fe59fe59b467fe12436844217 *man/simplifySignatures.Rd
9ec5aac4931f85f6686f1261c489aca7 *man/sortByMutations.Rd
bf179b729c44b20657bd3e0796d83be8 *man/sub-mutSignExposures-numeric-method.Rd
eee8def3f566734d9dae769c2034d835 *man/sub-mutationCounts-numeric-method.Rd
00403bc3a18f7a94195ae01409ed10dc *man/sub-mutationSignatures-numeric-method.Rd
1259e01c2ba7e0f53ed531465d55b162 *man/table2df.Rd
f83cc0a08947115caea3cf3d537c9279 *vignettes/get_sarted_with_mutSignatures.Rmd
