88dfd0f44b5ab9174634b34e45c57059 *DESCRIPTION
ee13dce5fdb12c01143f8b17a6034714 *NAMESPACE
7036bb6fb3d52b63f07e33359430226f *NEWS
c45f2365b090f1584fec4eabdd77e7eb *R/analysis.R
fc7f3477ae2acef22d4fa6a4176b3723 *R/bayes.R
a47c10be6896dfb48d6501f735abdf6e *R/graphics.R
627e79b80658102d07330c6553f543b9 *R/misc.R
51c34c1249c012ebd6460931d8843765 *R/model.R
c2f5c80c5284c6f53e21d23ef5547094 *R/next.R
1f4b7c277b460d2338d94c82f39d47a8 *R/workflows.R
46ed80095c1ccd2d2797b62906333562 *build/vignette.rds
dfc76da9a593ce28ef24f61a873581a1 *data/CP.example.RData
948219a7bfbcf0725890253db02ed445 *data/CPsnp.example.RData
e8c6ea7f60ba0977b0367f5f3bfe7a7d *data/abf.data.abfreq.txt.gz
0edf1da77e4ef2014022421b1945f2e8 *exec/sequenza-utils.py
fc731603bfdc4c2055dcdb79d2e3d22e *inst/CITATION
faabae181104610c31d20272de88adb8 *inst/doc/sequenza.R
14f6dac60dbcb9cae5023923396b782a *inst/doc/sequenza.Rnw
fbb2da96e9546ed5994885d9b2b51994 *inst/doc/sequenza.bib
48118eb2ba46828fa26f7ac2bc0586b8 *inst/doc/sequenza.pdf
f947de129f07281360e87abdf8a82a79 *inst/doc/sequenzaSNP.R
a2002aa5257d31736c8cce7ede537907 *inst/doc/sequenzaSNP.Rnw
2c83fd7c03c8da10de18f8003433d8a5 *inst/doc/sequenzaSNP.pdf
146365159aaa41bf261cefabb9c51f00 *man/CP.data.Rd
f4c74b75b1a68d663e6f01bb6e282348 *man/abf.data.Rd
6fedc5fbf660ce397774dc482d11c0a0 *man/baf.bayes.Rd
cb9cb2c72a00523688ba0cae15869c2a *man/baf.model.fit.Rd
d7fa16c8499e93e11817333b9087855b *man/chromosome.view.Rd
fc6a67b57c9cce7cbb84ea3ddeac09a7 *man/cp.plot.Rd
6aa41a92cd357e6464049e4485a7878f *man/find.breaks.Rd
bf87c63292decbcc33d01e2a5ba1b70c *man/gc.norm.Rd
90fd803411b356c2e492d299955c442e *man/get.ci.Rd
164438e60ca419c3298c5b0736061163 *man/model.points.Rd
0e5d9fa10e885c247d856142b5906f52 *man/mutation.table.Rd
55090b910496e29e9b59de209d2a81bb *man/plot.windows.Rd
6658b49dc988d59fb688628585c86849 *man/read.abfreq.Rd
2737ac4618183f75ef5ee893cd74dcf1 *man/theoric.baf.Rd
adb6b3acd4bef1cf133dfab8c9fde78b *man/types.matrix.Rd
038f7f08d66451d3e95ddeb0e60f33eb *man/varscan.Rd
1f388b1dc2b36a86cb7bc2c33ce84326 *man/window.values.Rd
441b995d4ae7b0a53d03d2df4dfac7ee *man/workflows.Rd
14f6dac60dbcb9cae5023923396b782a *vignettes/sequenza.Rnw
fbb2da96e9546ed5994885d9b2b51994 *vignettes/sequenza.bib
a2002aa5257d31736c8cce7ede537907 *vignettes/sequenzaSNP.Rnw
