53852896b4cc2e1efcf71c48ebd75c4e *DESCRIPTION
ad2e38c87a0bcfb35ae1322eb88ebd97 *NAMESPACE
7ec51f8472d1489e72891ab1102e82d4 *R/capitalize_first_char.R
6daa13e801af691177d7d14f73a3b5df *R/check_alleles.R
d4faf63a1d078a2ec19baca16d55fce3 *R/check_can_create_file.R
2b20964be9c2780a6deb1ab9f0bdcbcb *R/check_fasta_file_sequence_lengths.R
8e90d22b3eb44bc5b628d63ebb72642a *R/check_netmhc2pan_bin_url.R
b4dc12d49712d23a5346e94e90ee4df2 *R/check_netmhc2pan_data_url.R
43257c717c7b5f79d67e7f44aa0d7c53 *R/check_netmhc2pan_installation.R
6cb4e300052e6cfa11c95e9f40466fef *R/create_temp_fasta_filename.R
6c1d8ba62ebf88c1915ec4f2b0a99923 *R/create_temp_xls_filename.R
ecb2b71d4973cb6778944ccd1f4859cf *R/default_params_doc.R
6e843bd8ef08a5e8f4dd5eaf5efcd22e *R/download_netmhc2pan_bin.R
0709d49e235be11498f58007f99a269d *R/get_default_netmhc2pan_bin_path.R
8ec787380f44d474cabf0b4462e761f3 *R/get_default_netmhc2pan_bin_tarfile_path.R
52e03005cd705f0422085c6b9d94a5e7 *R/get_default_netmhc2pan_folder.R
1648f45a75a9ee8be809bc480cfa628a *R/get_default_netmhc2pan_subfolder.R
7d38a028356af5de029293b04af6ecf3 *R/get_default_netmhc2pan_version.R
6ea6164db0dc91b545253f1d63ab0b7b *R/get_netmhc2pan_alleles.R
921baf06eb8b8437bdf059d0529f01ce *R/get_netmhc2pan_archive_filename.R
2668b27b1bc81230fe43e7c688eb974d *R/get_netmhc2pan_bin_url.R
42a2ab1a6e53a7cfbcd13c900c6d84f3 *R/get_netmhc2pan_data_url.R
5e40a7ff13eebe6336b79798a48cf100 *R/get_netmhc2pan_url.R
7d57b108bbd58d9220827081aeb50ce0 *R/install_netmhc2pan.R
606ef43a08c1257c68afa50de23f536c *R/install_netmhc2pan_bin.R
ee63022836d5424c87888c2cb51b365b *R/install_netmhc2pan_bin_from_file.R
21dcd1f92df4c25ca7cf3caaaaff2422 *R/install_netmhc2pan_data.R
8306e2ef366ede9525d95146be9ed41f *R/install_netmhc2pan_data_from_file.R
c119d68d19cc3506f3756e85c20040e9 *R/install_netmhc2pan_from_files.R
d1de46c6f7bf687c5f236d8dd465ede4 *R/is_netmhc2pan_haplotype.R
08c203444dbbf435eadfe9029625de73 *R/is_netmhc2pan_installed.R
34c01bdc973511f1009dc8ec18fb9db1 *R/is_on_ci.R
ff0659adb4db676f4e2962a01f5f8c5e *R/is_url_valid.R
680d0fb02e000412dcce2423a7ca114b *R/netmhc2pan.R
a51aab22762f1056e2c3844b42125e0c *R/netmhc2pan_report.R
d8698237247d7baeb1b5763546135405 *R/netmhc2pan_self_test.R
04446c8adcb2472a95c15719ad33fe32 *R/predict_ic50.R
e60b1ba80279f14bcc51baeee1b413a4 *R/predict_ic50s.R
d1c2b4804d8b99253f9d837463f98b7a *R/read_netmhc2pan_xls_output.R
16823e908323dd4800efeb71b8bbbddb *R/run_netmhc2pan.R
316d5a0bf268fc6fe9fd98f590b3c3eb *R/set_up_netmhc2pan.R
4c9ad0bdaca8fdca1cf1c810ac9e9c4d *R/to_netmhc2pan_name.R
d3cd80c979eabccd035b49af308e2409 *R/uninstall_netmhc2pan.R
0cf581f17d03a5e360725e6cc3105d60 *build/vignette.rds
56a829b026cc3aea8e852eadf1a8d055 *inst/WORDLIST
633084a627f8a8e0d4983963535b5a1c *inst/doc/demo.R
66bfae021c78506278be064fe3ffa672 *inst/doc/demo.Rmd
3f9bdfe262bb9236a22751fb3c9467d3 *inst/doc/demo.html
7cde1dda74615b7dd17782f4b0f203bf *inst/extdata/example.fasta
1fd09d4fc0e7dbc24a0529414fac8ecb *inst/extdata/example.xls
1ce22bcc86b5a79a32cb361b60483229 *inst/extdata/example2.fasta
4339a989669b9649e8474ad4e6913f80 *inst/extdata/example2.xls
458bc01d22a457f87b7f54c6d8433e05 *inst/extdata/result.txt
1fd09d4fc0e7dbc24a0529414fac8ecb *inst/extdata/result.xls
8cf58ff425cb269a70537ef4f26ec9aa *inst/extdata/result_filter.txt
1fd09d4fc0e7dbc24a0529414fac8ecb *inst/extdata/result_filter.xls
7039a324b69defcc89bb23158e6c78bb *man/capitalize_first_char.Rd
bc8a244d569bfe90d5c6d1e071862848 *man/check_alleles.Rd
ac8ff6795c93c887d9db4cdb11a88c81 *man/check_can_create_file.Rd
eb2a6ae18fadd602b5b20b7891df4cdc *man/check_fasta_file_sequence_lengths.Rd
deb291d1e43c618a89067dd53f9c2980 *man/check_netmhc2pan_bin_url.Rd
44970109337aad45c655afe7de9e5b3e *man/check_netmhc2pan_data_url.Rd
52cd3599acf8deae7495e94287f45e4d *man/check_netmhc2pan_installation.Rd
c24e02b0eade0fce51bf932dc4f172f9 *man/create_temp_fasta_filename.Rd
35a736b815eaf5de8cf2cebab9140dbf *man/create_temp_xls_filename.Rd
975f908d8db5110c5302b3a11107942a *man/default_params_doc.Rd
d6d2f482355628e034f1bbb3cdb4384e *man/download_netmhc2pan_bin.Rd
f7de71e5ff24145a37bf281e4d155cfa *man/figures/AppVeyor.png
3f25ab37a1f6270f76c025cf6eda5421 *man/figures/Codecov.png
b55c56f3943a394162527954ca4a3009 *man/figures/GitHubActions.png
4f9bce317a2b82518737a7ee7381c2ec *man/figures/TravisCI.png
13e6d9410ae90889b99985d9fc94a335 *man/get_default_netmhc2pan_bin_path.Rd
fb55b94a6d7b9e2292c368335d36fa0b *man/get_default_netmhc2pan_bin_tarfile_path.Rd
222b24f602b581bf08cecc0c792fefc6 *man/get_default_netmhc2pan_folder.Rd
1664caa3d21e0d9231cdad7c7ba6c3a7 *man/get_default_netmhc2pan_subfolder.Rd
a3a81b0128ed4a49d836076ef3669ccd *man/get_default_netmhc2pan_version.Rd
2e10b94be6f3701a81cae814540d5b6d *man/get_netmhc2pan_alleles.Rd
5286fb8394261851b6f442607c464d8b *man/get_netmhc2pan_archive_filename.Rd
8aaba876e7eed799137119e983268ff3 *man/get_netmhc2pan_bin_url.Rd
536c9f3f7873a48350d9f4ff43108288 *man/get_netmhc2pan_data_url.Rd
7538d3f02f7cf20ccaec50a7ce00274f *man/get_netmhc2pan_url.Rd
0a1b9fa634adb2a9a711324749f44a3a *man/install_netmhc2pan.Rd
2f07eae0954602fc3332fa90b5fe0307 *man/install_netmhc2pan_bin.Rd
950ff307c09954402121f19f0e1ba5c4 *man/install_netmhc2pan_bin_from_file.Rd
6617289789c5d3dcff57fea23abe6968 *man/install_netmhc2pan_data.Rd
6eed1de61ebdf473bc9f531e6621f568 *man/install_netmhc2pan_data_from_file.Rd
f772dab6fb5009b9304d9bc241085dea *man/install_netmhc2pan_from_files.Rd
7332cca5fccb15be6f68fb9d73578ccd *man/is_netmhc2pan_bin_installed.Rd
b9f45af6769884716201c3e2de9ace5d *man/is_netmhc2pan_data_installed.Rd
f9016221ad3815625c8d8f4f3d7b9b38 *man/is_netmhc2pan_haplotype.Rd
f38c0d1762c6bf15d5e9d17474e1bae7 *man/is_netmhc2pan_installed.Rd
d06538869905eb7be1f58f72454c1ece *man/is_netmhc2pan_set_up.Rd
1940b05f4aa240f792116e0c95879f86 *man/is_on_appveyor.Rd
ad20185a0f55104517e17c40347a57f7 *man/is_on_ci.Rd
ee2e5882c8e83a6fc7283ddb58ab61bd *man/is_on_github_actions.Rd
6bdfaecd7856b2a4576b73e2633311cc *man/is_on_travis.Rd
23a543c7ffd6fff53b47dc3edf3fd353 *man/is_tcsh_installed.Rd
c8f7fd8f219f33e25bcc8387c9c7accb *man/is_url_valid.Rd
628054d5ccf31f5781ae13828518633f *man/netmhc2pan.Rd
722d0f11e0fa218fcc065eda6e9dfd90 *man/netmhc2pan_report.Rd
1b8e8cd1ccc6cffadf8438ff5a999cd4 *man/netmhc2pan_self_test.Rd
47310d3855dc8cfaab34ffc42bfe20b8 *man/predict_ic50.Rd
da2abfa38731f97c7bd9f9de97a4ce1c *man/predict_ic50s.Rd
364aec5ae87376d81fd42a20441e0b74 *man/read_netmhc2pan_xls_output.Rd
3eeef0edda228665fee2e55c809cfdb1 *man/run_netmhc2pan.Rd
8c87d56d201172c93d9779ca7ebbf884 *man/set_up_netmhc2pan.Rd
b07501590c3b743e0f01ae8f77eb0953 *man/to_netmhc2pan_name.Rd
9848c72288f2e8a195959d771667211c *man/uninstall_netmhc2pan.Rd
66bfae021c78506278be064fe3ffa672 *vignettes/demo.Rmd
