4344ab09bd6f2ab393f8dc65d14fcf70 *DESCRIPTION
5a8b9f97282d63ba110772c5e55e564c *NAMESPACE
f69b2f4ce64021e8ae02bb3eec350503 *NEWS.md
14ada9cfedc1abb507f0e965bd04bc54 *R/NegLogInt_Fn.R
104d344001ba5800b1153bd32e2e62d2 *R/PinerPlot.R
2ac7ed8ff725b2f4dcc5dc67be30b4aa *R/RebuildPlot.R
a171295c97ee56634013a9f6177031d5 *R/SSMethod.Cond.TA1.8.R
85a127ea9ab93c532d02a0eb6a2b647b *R/SSMethod.TA1.8.R
567bf23f0008f227522fe19f96d4d83d *R/SS_ForeCatch.R
5f2f6e84c016b3fef4d0cb9712ced36e *R/SS_RunJitter.R
833edf7cc02139c609a648dc98e5e960 *R/SS_Sensi_plot.R
2c7da225e36e5c425838ca3ba70e326a *R/SS_changepars.R
eeb416696fd2fc03e16b1b14b992102a *R/SS_decision_table_stuff.R
8131d63f4ff2979c2a2cd7a281bfa8fd *R/SS_doRetro.R
c388ecfcce9d37da4561c3d8211aa947 *R/SS_fitbiasramp.R
7e34e73edad26b6a9b271fcf3c257f9c *R/SS_html.R
ecabbd88994bd3c2331102a77d1ece99 *R/SS_makeHTMLdiagnostictable.R
787f516875d538387744604513ecc3d0 *R/SS_output.R
7d2810899f2999ed6e19f65dab5e1fce *R/SS_parlines.R
f7c4f1d57e7b19e54e5e1a86b319cb26 *R/SS_plots.R
da700f86447cf8a28077614341eff925 *R/SS_profile.R
67f5316e93d6b2dcc0e2c215405c9d03 *R/SS_read.R
b9170ecdf274d3bb3d83c48d4bf57e63 *R/SS_read_summary.R
2de2434880ffe24c560c4a7c02533362 *R/SS_readctl.R
81047b81b2eb70e999b02f7c984e411d *R/SS_readctl_3.24.R
096d66fd9a529b94d89be4a20e635257 *R/SS_readctl_3.30.R
913043d7dbbc4d18e1f9e0eeac503640 *R/SS_readdat.R
14cd1e681b9f5efb299525a2aa718871 *R/SS_readdat_2.00.R
f9b61d5ab93a69834c69b9448a80d0b8 *R/SS_readdat_3.00.R
902fea9c88d99909545b4d11caf789cf *R/SS_readdat_3.24.R
87f25e974ce44f1152ab154fbd836097 *R/SS_readdat_3.30.R
0001f1889ee1893d947fe7be8f4d4418 *R/SS_readforecast.R
9b8d5bee312802ba90f1017078860e95 *R/SS_readpar_3.24.R
ed051214a4146ec650ab4c1f96985510 *R/SS_readpar_3.30.R
4758858dafeb9328e608ef57c2835188 *R/SS_readstarter.R
83724347155edd7f068b603a739af5dc *R/SS_readwtatage.R
68d7fff82506553d0fab92ecc9594a16 *R/SS_recdevs.R
89d93cb9c6807fa47c270a69d3e444b6 *R/SS_splitdat.R
7e38a912161d9d457f8e8095e7a405f4 *R/SS_tune_comps.R
f4c0e19437dce45c0c7a90a78f0e094d *R/SS_varadjust.R
8c72686c87bfa28187747bdf5b840b53 *R/SS_write.R
773f848d9e079e169d308aeb7f090d68 *R/SS_writectl.R
a795404584cc6db28d42bbec6dfcc021 *R/SS_writectl_3.24.R
cdf0f538ba3cb02a8a6b5695b8ca493c *R/SS_writectl_3.30.R
6f43a236c740b85cc3969cfaa3a37284 *R/SS_writedat.R
8c8e283a47f4b54c35c22972829ec43e *R/SS_writedat_3.24.R
f4611c99d78fb346e57dd64483891637 *R/SS_writedat_3.30.R
6f199583b99f59382921dd1ae9d1a835 *R/SS_writeforecast.R
7879dcaa8bdcfa5d4e34900d2c11de9c *R/SS_writepar_3.24.R
10b7e2ff7a035febb77a00d96248494c *R/SS_writepar_3.30.R
2b8eeb137e3a61b30e448b221a052d4c *R/SS_writestarter.R
fda6ef3771328109c8eedfa3fb13ffc5 *R/SS_writewtatage.R
11e8666c1a71d31e40cbc3dd5a91e2db *R/SSbiologytables.R
71c2ae49241a677342b837c50801cfce *R/SSbootstrap.R
224e4bdad1f8da2728f9004daf0e0aaa *R/SSexecutivesummary.r
d947b9e13d111416bba3b602ebea33e8 *R/SSgetMCMC.R
11e48d2fc24e57b21120e1dc31d341fd *R/SSgetoutput.R
53b939f3d89ccf00579f10ca4767ae23 *R/SSmakeMmatrix.R
938724bc343343200056007760777b62 *R/SSmohnsrho.R
8fb35299d504ed0e19c69c4f7850042c *R/SSplotAgeMatrix.R
4589532013ba4dbcfe40cf9f9272f4a2 *R/SSplotBiology.R
24cbf8cf687de5beb4fa9513217de9e6 *R/SSplotCatch.R
bedae642c6f1976bea8cb7a2a59e2b4a *R/SSplotCohortCatch.R
3b8ab3b019c38ceb8cfb5bf338ad3661 *R/SSplotComparisons.R
75a7d45b2f4570b7494e641379ee9e7e *R/SSplotComps.R
9f538bed95acab703751b584e50c8351 *R/SSplotData.R
8007b071778032382ad2a389582aaa03 *R/SSplotDiscard.R
cb1eb73372a95b239d8163d242f861a9 *R/SSplotDynamicB0.R
ef635f630894abcea3961e861e54703d *R/SSplotIndices.R
a4c38ff185390ba310cbf9cbb70368c1 *R/SSplotMCMC_ExtraSelex.R
bdeffab9b25cf85f4399edae27091bf8 *R/SSplotMnwt.R
800229fff6c1be23965a6ea03b8d90da *R/SSplotMovementMap.R
bee3d53c331cb693abc3ef86a0615f67 *R/SSplotMovementRates.R
774f0cc958a51e09b7889d1f3929560e *R/SSplotNumbers.R
656fc9aaed4ac7d56d0e26198d763e46 *R/SSplotPars.R
17929abcb5bc58134ba3d0f698ca82d5 *R/SSplotProfile.R
2749ebac6d4f8cc47324e7ef440deae4 *R/SSplotRecdevs.R
f645da70ed0b73a290fa1eac2e0e0029 *R/SSplotRecdist.R
c806767bcd8250f0d8fed6b04438653e *R/SSplotRetroDevs.R
4e35bd7cfbde6847910ac037229283e2 *R/SSplotRetroRecruits.R
109efae46d6b9b735f9c8247aa1d4d97 *R/SSplotSPR.R
ae75d5b3c7c7277d97441a5a0a7b6f8e *R/SSplotSelex.R
53ed12059f1eb6120e4970b45c6e74bf *R/SSplotSexRatio.R
6cdeecb76da0f9983ce429e8554817e7 *R/SSplotSpawnrecruit.R
64c57f547a88b23b6579275b1d8f0807 *R/SSplotSummaryF.R
26cc7c991bdda2f95fe892a1c91c7871 *R/SSplotTags.R
62cfcc945a3c271427b83ba68b59fc38 *R/SSplotTimeseries.R
875517c16a27b9498c2a21b95de7250d *R/SSplotYield.R
b6c3b854eefeb8c159a0f868a8c1921e *R/SSsummarize.R
95587ac0fa75f1ccdec24a975af6c4a3 *R/SStableComparisons.R
17e44016a978f426178c69c41b4e1a81 *R/SSunavailableSpawningOutput.R
9380acf228dc84521b883d47eff498e3 *R/TSCplot.R
c679d1b1dcc8b08f2bb1c517223057a7 *R/bubble3.R
f56c5298649336f71b01f5d86eb17ac7 *R/check_inputlist.R
953cb61aae6e1d282c594f1c9c37ff9a *R/check_model.R
e101dbfc98959081193ba52530732e69 *R/copy_SS_inputs.R
4671884eb2a9bdb124657c7cff9bbe26 *R/file_increment.R
be3e0115eb69403f1f0c03358278b21b *R/getADMBHessian.R
f3528a867d054cb5683f71b0e73f40c4 *R/get_SIS_info.R
c977743592e1d2c2d6c62f4b409f1315 *R/get_comments.r
5d93e73a61024c5f4c5af54b424e20df *R/get_ncol.R
41031fe122374970b80e17eba93af743 *R/helper_fxns.R
a683655dea5c32ab396e46f9faeb7246 *R/make_multifig.R
7d62c7f1ec2ed6613d71f3a34e14d89a *R/make_multifig_sexratio.R
decdb5bdbf6a7fab20753afafe169db8 *R/mcmc.nuisance.R
fd56e044d34188e46b0892dc831a677b *R/mcmc.out.R
7e8b92c3f6d9b524eca4a31c6ea00d7e *R/mountains.R
29c71b5f4056fd11f9c60bfe1c68fdcd *R/plotCI.R
60805bdc21af00a2566a9218429d02a7 *R/populate_multiple_folders.R
27346b74f97178c7e25cbf11101b9ed7 *R/r4ss-package.R
5cc9ee44f87c710d0c6e0974a357eb1e *R/r4ss_logo.R
0a968f1c1ac700fd56e742b450bde257 *R/read.admbFit.R
7582baff3a8968d3db9287a7f961064f *R/run_SS_models.R
daf7db4a70c6877fa030c1605ef88579 *R/selShapes.R
8a5f39ac4d0e52fa1b80143ecd024601 *R/stackpoly.R
8dce353a3429b75cf7ee2d7fa8cb4138 *R/write_fwf4.r
a510929199426afe77a301a2d0465ae1 *README.md
532479fcf30c25c7c56b960aa1a5e272 *inst/CITATION
d1c7fbac1088506ed734a2cca53dd013 *inst/WORDLIST
c1148637104020072d2f38092de49f8e *inst/extdata/simple_3.30.13/forecast.ss
6b1a50ab470a9a703db98ec2aefb33d7 *inst/extdata/simple_3.30.13/simple_control.ss
cfbe5b5cb83ebc71e39215f7739eb363 *inst/extdata/simple_3.30.13/simple_data.ss
ed2e06381a6e81d5519c703b2c3d5354 *inst/extdata/simple_3.30.13/starter.ss
2708363479bf323faabeb73d4d0bd680 *man/DoProjectPlots.Rd
44ebc51aabb5ae9217d3c76045e4773c *man/NegLogInt_Fn.Rd
7474835e19beccba3298fca0c20c4a40 *man/PinerPlot.Rd
14169ae60c3c87ebdfcdfc4696569ab1 *man/SSMethod.Cond.TA1.8.Rd
1e5899ea014a91ef6fc3f53b2ead4e58 *man/SSMethod.TA1.8.Rd
a4a08fde0d42614b1eb17006bf4d94ee *man/SS_ForeCatch.Rd
a0350795a1fdea973033ebaab110b2d0 *man/SS_RunJitter.Rd
1d761295e616d6b549024acfeb685902 *man/SS_Sensi_plot.Rd
c314706bdafc1e79bcdce39a800a8f72 *man/SS_changepars.Rd
02b2c5a69b23a7570982ce7ec2ba8a45 *man/SS_decision_table_stuff.Rd
ab84efc7395905d1ade597bc0f96da9c *man/SS_doRetro.Rd
b2022ddf4d8a984b0ed793585ad28c39 *man/SS_fitbiasramp.Rd
e5e35943f186c2914980be9abd53e1e1 *man/SS_html.Rd
c4b4ce833ce0a6876c2285a0551ab7ab *man/SS_makeHTMLdiagnostictable.Rd
14eb84f9b8a9e3a98fd3650b354d0ba2 *man/SS_output.Rd
cb590c7f6893250e0216ddca1537abf6 *man/SS_parlines.Rd
2ecf1626f93198514dbea0bf6a4b98cc *man/SS_plots.Rd
8c70a407e7d856ba58148eeb575aa6e5 *man/SS_profile.Rd
d85398c4a9409a8d8001861b494e34ea *man/SS_read.Rd
e5f1a5bb2e5911c4d692733bfb638b1a *man/SS_read_summary.Rd
1571afdc6371361a73778f9e6eb9d59a *man/SS_readctl.Rd
32cddf7ebe44f3e59ed2ecfbf8c0a585 *man/SS_readctl_3.24.Rd
53c67e2955326cb0c233c518da342165 *man/SS_readctl_3.30.Rd
517db05d4d377b9689379e8203fbfa52 *man/SS_readdat.Rd
a9cabd83bfa8ac6672399dea6a1d9505 *man/SS_readdat_2.00.Rd
56da9a3987565a56169136115c5973c4 *man/SS_readdat_3.00.Rd
629e5ca9dfcf1d498349c26f6a045301 *man/SS_readdat_3.24.Rd
d5fc346776b67a47202b260b74c02917 *man/SS_readdat_3.30.Rd
c164a79c5fc996b40102f1ece3ff5b48 *man/SS_readforecast.Rd
d83de0c22931e17faeeb16fd19c1e136 *man/SS_readpar_3.24.Rd
8bc2b11dfd1c802dbfbe0f19882d62e7 *man/SS_readpar_3.30.Rd
e99f2462968828c174a560a55c8c09a1 *man/SS_readstarter.Rd
bdfa4cc3e6630318ee1be522f3504ae3 *man/SS_readwtatage.Rd
1b36bf67f06195f054c5fb0d1b12d211 *man/SS_recdevs.Rd
f3ce15c38a8efbf0dcccfd2dac0890ab *man/SS_splitdat.Rd
8a327d6806b28227095a4558fb9655da *man/SS_tune_comps.Rd
d64503a66fc29a4b4629e6b8a7c267ce *man/SS_varadjust.Rd
919b47d1ba466151c7fb101cc27be0fe *man/SS_write.Rd
a7d158733953e6943ebd9dbc8855ceb7 *man/SS_writectl.Rd
40391c2804e4fc22b9be3a92cc370569 *man/SS_writectl_3.24.Rd
2e11e5c87f37559b4a9d2bf29f8a864e *man/SS_writectl_3.30.Rd
9c81e120fc6a00c807b8ec60e9fa8c95 *man/SS_writedat.Rd
9b57a7fcbee717e4b0e5f6041f213ed8 *man/SS_writedat_3.24.Rd
709e8e85e6b6c35855d34b016b16eee1 *man/SS_writedat_3.30.Rd
f5ac329fd4553366ae2619c4da777b75 *man/SS_writeforecast.Rd
82747c7f56f46162f8895a92bfdace55 *man/SS_writepar_3.24.Rd
afd67c68b719d67d7b8f89e51e633f1e *man/SS_writepar_3.30.Rd
d1b4dfc94b5651586bb00a38bbc2cbba *man/SS_writestarter.Rd
291b6bf54bcaa28494a2146ffe345797 *man/SS_writewtatage.Rd
7ad206ddff56bca953e98fe769b2ade0 *man/SSbiologytables.Rd
4d5eb5ec3c162245ee4954f61ccea34d *man/SSbootstrap.Rd
091a705b02508092ffa32b115351c8c6 *man/SSdiagsTime2Year.Rd
bbd0ffe5ae43b8ff8995c1aa6df775e3 *man/SSexecutivesummary.Rd
2e0d706fe2f5e6162895c8c0340de537 *man/SSgetMCMC.Rd
369fa9bf2daab42af132f69ceca8a111 *man/SSgetoutput.Rd
a72b00b49541e1ef708a47b806a23a1c *man/SSmakeMmatrix.Rd
808a6dcfd26be59b3b1c84770309acf4 *man/SSmohnsrho.Rd
1d848bcd5826fb8457c040a308e515b5 *man/SSplotAgeMatrix.Rd
a9b27e16db4374364267ac5f836cabbd *man/SSplotBiology.Rd
8e9bbee7c2c8733ff234c7219eab4ba3 *man/SSplotCatch.Rd
c2666bb2644655f8b95759b297353711 *man/SSplotCohortCatch.Rd
25ac722ba3a85cee42692c0fd30336c3 *man/SSplotComparisons.Rd
60e7d51ffe32f4fe9efda5bf7adf1929 *man/SSplotComps.Rd
1a7df3b2be68404a5ce121dfa589ca33 *man/SSplotData.Rd
82488d5b082ec2d4c22a3db7f1b2852a *man/SSplotDiscard.Rd
6529c26c883261426b206e0c34fdb650 *man/SSplotDynamicB0.Rd
2e8cb4507a0c4b31df631d0dfba7754d *man/SSplotIndices.Rd
f183e789c5157f47d60e1159b92a3d8e *man/SSplotMCMC_ExtraSelex.Rd
b7ccff59beb1aa923c84ded363819dd7 *man/SSplotMnwt.Rd
8c7501cae9e1ea3dad4b4ecb0c993a40 *man/SSplotMovementMap.Rd
82e62d294d877773318db7b04cf05e1b *man/SSplotMovementRates.Rd
c3fb18e61952774ac50a00c0b10233df *man/SSplotNumbers.Rd
6cdd21257085dd44dc4439b058e50ac4 *man/SSplotPars.Rd
8c87144f3ff63a5f832eac3cb7f7f71f *man/SSplotProfile.Rd
2c528a5a2f556a08cdf0a057dd08d1cf *man/SSplotRecdevs.Rd
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267f6aee8a7a799b66e3eaf74e717b3b *man/SSplotRetroRecruits.Rd
1576f90894db399df284bc8a2c418384 *man/SSplotSPR.Rd
17ab8c702f6fab8bc5c3720f8fa63eac *man/SSplotSelex.Rd
df69b8e3a80bc5ca3838dbf8d762a1ac *man/SSplotSexRatio.Rd
ed32d51e0b0f5a86c349555c1fdb0892 *man/SSplotSpawnrecruit.Rd
622feff96fedd3278f2b4bced7f359dd *man/SSplotSummaryF.Rd
1442dbb235569cb3a69db4da7f4f3fce *man/SSplotTags.Rd
85d269407cd26ee64afe48635edb4a98 *man/SSplotTimeseries.Rd
c366e284c829ece3b32879ebb34d931e *man/SSplotYield.Rd
5271d911fbd10a6bed0cfb5d89447eea *man/SSsummarize.Rd
52a1b205b13bb282b0b708fd8e70eade *man/SStableComparisons.Rd
b5dbc88f241e62435ace428e7bb33e06 *man/SSunavailableSpawningOutput.Rd
681642f0721adb7a52643544a338280b *man/TSCplot.Rd
43f8cfbacad551a269ec1113e3fdf73b *man/add_legend.Rd
2107cef8a85448667c72ac662da34216 *man/bubble3.Rd
39924d952c3be1ebc73d711fc458f5e0 *man/check_inputlist.Rd
dad7b45604a87dd9596611ba68b5e390 *man/check_model.Rd
355e1f7e0714c414afed3924d7f4763e *man/copy_SS_inputs.Rd
1c123de290e88037b8ae8aae720b67af *man/file_increment.Rd
78eff1aff8abce7a3a5fc04f26a730af *man/getADMBHessian.Rd
563c12e3b2203a0568333d2277a1de8c *man/get_SIS_info.Rd
8faeca6fadd5f749cb974182c26fa616 *man/get_comments.Rd
9127babdae132c79bba44250e978ef61 *man/get_dat_new_name.Rd
e493d70bc0629c713879b5719c9a9029 *man/get_last_phase.Rd
d7471d5da612cc7fd8903ce2cd26174f *man/get_tuning_table.Rd
201952c1422d55d1d0a14ead2da02093 *man/get_tv_parlabs.Rd
928f06f0278ec4fedc1b6a1a9de5efd2 *man/is.wholenumber.Rd
a4dd745f13765c87c9d975fb77c7539f *man/make_multifig.Rd
fb8fee7733b4357332f6fe6ac78f3300 *man/make_multifig_sexratio.Rd
713b989769015c374e553e3d32e0115c *man/mcmc.nuisance.Rd
86e26c173c72d7b47f7c241657b70afd *man/mcmc.out.Rd
cf5126cdedccaeabeb5ca686f70f91cd *man/mountains.Rd
ed3367711bc9b536df7f85c1e8d0a239 *man/plotCI.Rd
44a406fc5cd8038a3fcb28a41fd2637c *man/populate_multiple_folders.Rd
3e928cc20072e09407ad1c30cc2ce9f6 *man/r4ss-package.Rd
03f5f6fb427cb2f1836002c7f439b75d *man/r4ss_logo.Rd
f6d64616f8d837345af5de0cc434b539 *man/read.admbFit.Rd
d83e6321770d431c2ba79c88fb73bf90 *man/rich.colors.short.Rd
4bf2317432a61f0a7bca3dd9f487d6c0 *man/run_SS_models.Rd
427cec9367214cefb37ee27c42443c3c *man/save_png.Rd
04b7c3efe9988cc039b30b30c47dbd51 *man/selShapes.Rd
844cb01cb9b985e41ca2eda369653976 *man/sspar.Rd
8df5f1b0289010bd54eaa849443aad00 *man/stackpoly.Rd
3826355583af200c439d8e568e15f59b *man/translate_3.30_to_3.24_Q_setup.Rd
5fc68d5e2b378fe07887fa0fe955b04f *man/translate_3.30_to_3.24_var_adjust.Rd
376948ec9ed38f068380e1f081ab8e06 *man/write_fwf4.Rd
