6d54cf387772b0191d49481ccc616b08 *DESCRIPTION
59749c8eb133e185e2b11f8cde49ba3b *LICENSE
7c5f09cd4e37827052df583e2e38b449 *NAMESPACE
d97431ad2750743b84a4609f14f57b04 *NEWS.md
07e464b67e346a1648e56f58214350ef *R/assign_taxonomy.R
ed689728fcbed9162a1418327f55df5c *R/convert_asv_matrix.R
aaf681d1a480d2e21e8647be2c835800 *R/cut_primers_trim_reads.R
5d368b0d38c3ad3e0ef0337a75d3215d *R/format_databases.R
1bae123d0c63af4a38afbaa7fd6dd7db *R/make_asv_abund_matrix.R
7ecdf8d34b362bd1e29cebd36bd19df4 *R/prepare_reads_count_primers.R
723a25af7b02f60ebce21aa43541adfe *README.md
fabf6d999e700d122a2d04e5037bf2be *inst/extdata/S1_R1.fastq.gz
4780f3cad846b16452fa5b346673769c *inst/extdata/S1_R2.fastq.gz
ed9a24aa03760a14c6a776d51664aed2 *inst/extdata/S2_R1.fastq.gz
13ae4c2ffedc47d7cd2d7768a305f8e7 *inst/extdata/S2_R2.fastq.gz
a626a6ca43c939afa8b3ffb0c9a06aee *inst/extdata/fungidb.fasta
98ed0bdc41e4b108675c70080ba92d6d *inst/extdata/metadata.csv
863268a7fe1c5287350db8e34bb620cf *inst/extdata/oomycetedb.fasta
3ebea419d83a1b09d5efe6541126eb9d *inst/extdata/primerinfo_params.csv
089fb7e09035ccc23efdea67ecc0f103 *man/assignTax_as_char.Rd
32923b41f9c364b8b3a9a4d0b99f3b16 *man/assign_tax.Rd
ae06b6d7b1e5571f4fef5de0b5229f5b *man/assign_taxonomyDada2.Rd
76557b9fd0b8fa60be1162075789bd44 *man/convert_asv_matrix_to_objs.Rd
654faf8104d7b3b0b83f3a27ab839b6e *man/countOverlap.Rd
b6b6da74d55483ecf11064a6221df7f6 *man/createASVSequenceTable.Rd
1c8590a33cec5bd3caaf7b5a79939423 *man/cut_trim.Rd
7a2ca022de9b6ce3a9055cd039ab7149 *man/figures/Figure1.svg
c0856570aa6fab944045a70a031114bd *man/figures/demulticoder_logo_iteration1.png
20d4e30119269cf832a626689d5269cc *man/filter_and_trim.Rd
fd88da606947844869eaf14b8d1c159a *man/format_abund_matrix.Rd
234d4ddc4ecb20514bf4a129d0671a41 *man/format_database.Rd
e96ee8e761f2c93d190dbe78d0800be0 *man/format_db_16S.Rd
a0d2d6518d533bc338954704348e72b6 *man/format_db_its.Rd
ffc58ab656a3db294a4a7d6a55ecee8e *man/format_db_other1.Rd
897d72d175441697832a9f3ba6a25d91 *man/format_db_other2.Rd
d8d9f7f3c4fbf9b8cac1d005608e13b9 *man/format_db_rps10.Rd
173b4927ee5406aa596b63c1b26a4aef *man/get_fastq_paths.Rd
53325919e66d9b92522373170d447a1f *man/get_post_trim_hits.Rd
8e681b2bb0f2802f9e4b0ae6a5f2184d *man/get_pre_primer_hits.Rd
91830e8e1ab382baf1aac1098100e76d *man/get_read_counts.Rd
2532c155b4593f96f855b816ecdae5aa *man/infer_asv_command.Rd
6bd069ef85ff615a97665db21a464de2 *man/infer_asvs.Rd
3aedb7f374c3202da6e93502214fbd43 *man/make_abund_matrix.Rd
2ce1a788a4a4c80fc3c4bde5a90261a7 *man/make_asv_abund_matrix.Rd
ec0d3b3e32ca54713b563dfc058c4add *man/make_cutadapt_tibble.Rd
a13cfd85c356073aa8073dea10f746f7 *man/make_seqhist.Rd
e130213bd3bbc453184bfadba9e6f4ca *man/merge_reads_command.Rd
13eaeffc7ff585091f0db11c8621445a *man/orient_primers.Rd
e8ba08295f79eb5d4e3446c1badc5ae5 *man/plot_post_trim_qc.Rd
e18b32714e5464e9970dadfd9cc1e6d2 *man/plot_qc.Rd
99f8710169f1a497072e617646dfef94 *man/prep_abund_matrix.Rd
99b056f4c5fb079c031e3e639ef6ecb6 *man/prepare_metadata_table.Rd
21554a6876943e1ff3f12340c4604466 *man/prepare_reads.Rd
d1a0d402039fc62b1aa42387b5a33bc4 *man/primer_check.Rd
5764b50fbdb3f273dc6f10c5c49b2fbd *man/process_single_barcode.Rd
b3fc9f25bb1dabaa669b09bc6165b83c *man/read_fastq.Rd
ca67617e05ce74bd578900c6069f45c4 *man/read_parameters_table.Rd
710ea5caf9fedbd476c878f597ac3c5f *man/read_prefilt_fastq.Rd
4d2b7ec8777386333d70b252f2053eb1 *man/remove_ns.Rd
11fc59ff960425a162132c28b0b871d9 *man/run_cutadapt.Rd
afb210a567524cc93de21c2f6b313c64 *man/setup_directories.Rd
e8cedf919505b32ee7094ba91941ac16 *tests/testthat.R
a72ae30dbf6eec435feb9314cbdbca5b *tests/testthat/test_assign_tax.R
3b49c42f92170ad4a7b4ddc83f6f100a *tests/testthat/test_convert_matrix.R
55f67a864648e111bcf550fb87b3f813 *tests/testthat/test_cut_trim.R
add96790c8d79c3b4f53af152ff651e8 *tests/testthat/test_make_matrix.R
858209eefad375989cc99248e544adb1 *tests/testthat/test_prepare_reads.R
