Last updated on 2026-02-10 07:49:29 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [2m/14m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.726, system: 0.087, elapsed: 5.880 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.132, system: 0.327, elapsed: 32.642 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.238, system: 0.032, elapsed: 1.864 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 8.066, system: 1.528, elapsed: 175.992 seconds]
Computing values for grid cells...
... done. [user: 0.193, system: 0.016, elapsed: 0.638 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 21.118, system: 2.425, elapsed: 220.837 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.619, system: 0.061, elapsed: 5.409 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.945, system: 0.186, elapsed: 30.867 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.224, system: 0.024, elapsed: 1.370 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 8.125, system: 1.357, elapsed: 175.110 seconds]
Computing values for grid cells...
... done. [user: 0.182, system: 0.009, elapsed: 0.708 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.714, system: 1.800, elapsed: 215.907 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.696, system: 0.127, elapsed: 8.093 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.923, system: 0.190, elapsed: 34.111 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.328, system: 0.030, elapsed: 1.688 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 8.106, system: 2.311, elapsed: 147.827 seconds]
Computing values for grid cells...
... done. [user: 0.204, system: 0.021, elapsed: 0.930 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.414, system: 0.492, elapsed: 3.592 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 22.493, system: 3.527, elapsed: 200.408 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.750, system: 0.100, elapsed: 5.798 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.102, system: 0.348, elapsed: 32.338 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.218, system: 0.031, elapsed: 1.277 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.739, system: 1.655, elapsed: 102.328 seconds]
Computing values for grid cells...
... done. [user: 0.192, system: 0.023, elapsed: 0.322 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 12.677, system: 1.170, elapsed: 21.494 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 33.559, system: 3.915, elapsed: 167.030 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [2m/15m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.720, system: 0.074, elapsed: 6.002 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.125, system: 0.299, elapsed: 32.400 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.235, system: 0.037, elapsed: 1.210 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.544, system: 1.441, elapsed: 179.833 seconds]
Computing values for grid cells...
... done. [user: 0.183, system: 0.016, elapsed: 0.763 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.514, system: 2.324, elapsed: 223.474 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.738, system: 0.076, elapsed: 6.574 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.715, system: 0.127, elapsed: 29.876 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.222, system: 0.022, elapsed: 1.293 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.136, system: 0.949, elapsed: 133.587 seconds]
Computing values for grid cells...
... done. [user: 0.172, system: 0.007, elapsed: 0.415 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.568, system: 1.227, elapsed: 173.734 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.713, system: 0.066, elapsed: 3.849 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.792, system: 0.171, elapsed: 23.191 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.218, system: 0.022, elapsed: 1.199 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.504, system: 1.941, elapsed: 174.792 seconds]
Computing values for grid cells...
... done. [user: 0.185, system: 0.018, elapsed: 0.404 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.343, system: 0.449, elapsed: 2.790 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 21.485, system: 2.871, elapsed: 208.257 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.701, system: 0.064, elapsed: 5.136 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.917, system: 0.220, elapsed: 26.435 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.249, system: 0.047, elapsed: 1.203 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 8.072, system: 2.230, elapsed: 167.881 seconds]
Computing values for grid cells...
... done. [user: 0.193, system: 0.015, elapsed: 0.597 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 12.221, system: 1.121, elapsed: 54.500 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 33.187, system: 4.108, elapsed: 259.136 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64