Suggests: covr, knitr, testthat (>= 3.0.0), codemetar, vdiffr, shiny,
diffviewer

Depends: R (>= 4.2.0)
Imports: base64enc, beepr, cli, data.table, fs, gargle, glue,
googleCloudStorageR, graphics, grDevices, httr, jsonlite,
lifecycle, magick, pdftools, purrr, readtext, stats, stringr,
utils, xml2
Suggests: knitr, ngram, rmarkdown, testthat (>= 3.1.10)

Imports: DDD (>= 5.0), deSolve, doParallel, foreach, graphics,
magrittr, Matrix, parallel, pracma, Rcpp (>= 1.0.10), stats,
subplex, tensor, testit, utils
Suggests: ape, covr, dplyr, future, future.apply, ggplot2, ggtree (>=
3.0.0), gridExtra, knitr, phytools, purrr, rmarkdown, testthat
(>= 2.1.0), tibble, tidytree, tidyr

Depends: R (>= 4.0)
Imports: methods, ape, phylobase, ggplot2, scales, ggtree, DAISIE,
castor, tibble, rlang
Suggests: testthat (>= 3.0.0), knitr, rmarkdown, covr, diversitree,
corHMM, tidyr, dplyr, ggimage

Depends: R (>= 3.5)
Imports: ggplot2, iBreakDown (>= 1.3.1), ingredients (>= 2.0),
kernelshap
Suggests: gower, ranger, testthat, methods

Suggests: auditor, gbm, ggrepel, h2o, iml, ingredients, lime,
localModel, mlr, mlr3, ranger, recipes, reticulate, rmarkdown,
rpart, stacks, xgboost, testthat, tidymodels

Depends: R (>= 4.1.0)
Imports: FNN, caret, class, cluster, dbscan, dplyr, e1071, ggplot2,
nnet, randomForest, reshape, tree

Depends: R (>= 4.1.0)
Imports: tspredit, daltoolbox, leaps, FSelector, doBy, glmnet,
smotefamily, reticulate, stats

Depends: R (>= 4.4.0)
Imports: cowplot, dplyr, ggplot2, ggpubr, Matrix, patchwork, scales,
RcppHNSW, rlang, tidyr, withr
Suggests: Seurat, knitr, rmarkdown, spelling

Depends: R (>= 4.0)
Imports: dplyr, FNN, magrittr, sf, units, smoothr, terra, tibble,
tidyr, shiny, leaflet, shinydashboard
Suggests: ggplot2, knitr, rmarkdown, testthat (>= 3.0.0)

Imports: caper, ape, deSolve, matrixStats, expm, picante, Matrix, DDD
(>= 3.4), stats, methods, Hmisc

Depends: R (>= 3.5), ggplot2 (>= 3.3.0)
Imports: ellipse, dplyr, scales, stringr, mgcv, truncnorm, triangle,
ggrepel, tidyr, rlang
Suggests: testthat, lintr, knitr, rmarkdown, kableExtra