Imports: ggplot2, scales, grid, grDevices, graphics
Suggests: covr, knitr, rmarkdown, testthat

Depends: R (>= 4.1.0), ggplot2
Imports: ggforce, rlang, ggfun, stats, tidyr, dplyr, utils, yulab.utils
(>= 0.1.6)
Suggests: knitr, rmarkdown, prettydoc, maps, scales, cli

Depends: R (>= 2.10)
Imports: sp, foreach, parallel, doSNOW, raster, fields, LiblineaR,
limma

Depends: R (>= 4.0.0)
Imports: Matrix, methods, progress, stats, reshape2
Suggests: rmarkdown, knitr, testthat, prettydoc

Imports: Seurat, dplyr, plyr, scales, HGNChelper, openxlsx

Depends: R (>= 3.5.0)
Imports: dplyr, ggplot2, ggrepel, graphics, grDevices, igraph, irlba,
magrittr, Matrix, methods, parallel, pbmcapply, pROC, Rcpp,
rlang, scales, Seurat, stats, tibble, utils, uwot, withr
LinkingTo: Rcpp, RcppArmadillo, RcppProgress, RcppEigen
Suggests: ggrastr (>= 0.1.7), jsonlite, rmumps, testthat

Depends: R (>= 2.14.0)
Imports: survival, splines, corpcor, fda, R.methodsS3, gnm

Depends: R (>= 4.0.0), Seurat (>= 4.3.0.1)
Imports: circlize, cli (>= 3.2.0), cowplot, data.table, dplyr, forcats,
ggbeeswarm, ggplot2, ggprism, ggrastr, ggrepel, glue,
grDevices, grid, janitor, lifecycle, magrittr, Matrix (>=
1.5.0), mcprogress, methods, paletteer, patchwork, pbapply,
purrr, rlang (>= 1.1.3), scales, scattermore (>= 1.2),
SeuratObject (>= 5.0.0), stats, stringi, stringr, tibble, tidyr
Suggests: BiocFileCache, ComplexHeatmap, dittoSeq, DropletUtils,
ggpubr, hdf5r, knitr, Nebulosa, remotes, reticulate, rliger,
rmarkdown, scuttle, tidyselect, qs, viridis

Depends: R (>= 3.6.0)
Imports: checkmate, DBI, dbplyr (>= 2.4.0), dplyr, glue, lubridate,
methods, openssl, parallelly, purrr, rlang, R6, stringr, tidyr,
tidyselect, utils, magrittr
Suggests: callr, conflicted, devtools, duckdb (>= 0.10.1), ggplot2,
here, jsonlite, knitr, lintr, microbenchmark, odbc, pak,
rmarkdown, roxygen2, pkgdown, RPostgres, RSQLite, spelling,
testthat (>= 3.0.0), tibble, tidyverse, withr

Depends: dplyr, edgeR, foreach, ggplot2, R (>= 2.10), Seurat
Imports: data.table, gtools, harmony, MASS, Matrix, NMF, reshape2,
Biobase, mgcv, grDevices, glmGamPoi
Suggests: FARDEEP, reticulate, plotly, DESeq2, knitr, limma, nnls,
preprocessCore, rmarkdown, scater, scran, SingleCellExperiment,
doFuture, future, sctransform, Linnorm