Depends: R (>= 4.1.0)
Imports: cli, dplyr, ggnetwork, ggplot2, ggraph, L0Learn, Matrix,
methods, purrr, Rcpp, stats, thisutils
LinkingTo: Rcpp
Suggests: ComplexHeatmap, circlize, gtools, gganimate, ggExtra,
ggpointdensity, ggpubr, igraph, irlba, network, patchwork,
plotly, precrec, pROC, proxy, tidygraph, RANN, RColorBrewer,
Rtsne, RTransferEntropy, uwot, viridis

Imports: numDeriv (>= 2012.9-1), lme4 (>= 1.1-6), Formula (>= 1.1-2),
methods, spaMM

Depends: R(>= 3.2)
Imports: data.table, magrittr, Rcpp, stats, utils
LinkingTo: Rcpp
Suggests: covr, knitr, rmarkdown, testthat (>= 3.0.0), xplorerr

Suggests: testthat (>= 3.0.0), tibble, tidyverse

Imports: parallel, stats, graphics, grDevices

Imports: readxl, data.table, plotrix, tidyr, ggplot2, xlsx, httr,
jsonlite, GGally, network, stats, RColorBrewer, svglite
Suggests: knitr, rmarkdown,

Imports: dplyr, geigen, ggplot2, ggrepel, methods, ROCR

Imports: igraph (>= 1.0.1), Matrix (>= 1.1-4), methods, utils

Depends: R (>= 2.10)
Imports: igraph, janitor, ranger, coop, foreach, doParallel,
data.table, ggplot2, BiocManager
Suggests: Hmisc (>= 4.3-0), mgcv (>= 1.8-31), nortest (>= 1.0-4), NNS
(>= 0.4.7.1), readr, parallel, shiny, shinythemes,
shinyWidgets, shinyjs, shinycssloaders, colourpicker, magrittr,
DT, knitr, rmarkdown

Imports: dplyr (>= 0.7.0), jsonlite, httr, magrittr, purrr (>= 0.2.3),
rlang, tibble, tidyr, xts, zoo
Suggests: testthat

Depends: R (>= 4.1.0)
Imports: methods, reticulate (>= 1.41.0), sdsfun, sf, terra
LinkingTo: Rcpp
Suggests: gdverse, ggplot2, knitr, Rcpp, rmarkdown, spEDM, tEDM

Depends: R (>= 3.1.2)
Imports: data.table, ggplot2, grid, plyr, utils, iterators, doParallel,
parallel, foreach
Suggests: knitr, reshape2, ClustOfVar, rmarkdown

Imports: boot, dplyr (>= 0.4.3), parallel

Depends: R (>= 2.10)
Imports: Matrix, colorspace, dendextend, quadprog, mixtools, stats,
graphics
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)

Depends: R (>= 3.3.0)
Imports: spaMM (>= 4.5.0), proxy, blackbox (>= 1.1.41), mvtnorm,
methods, numDeriv, pbapply, ranger, foreach, matrixStats, boot,
nloptr, geometry, cli, viridisLite
Suggests: testthat, Rmixmod, caret, xLLiM, reticulate, mafR (>= 1.0.11)