Depends: R (>= 2.10)
Imports: ggplot2, glmpca, Seurat, magrittr, dplyr, tidyr, purrr,
Matrix, Rdpack, SeuratObject, WGCNA, broom, stats, methods,
matrixStats
Suggests: renv, testthat (>= 3.0.0), vdiffr, rmarkdown, knitr, qpdf

Depends: R (>= 4.0.0)
Suggests: assertthat, circlize, cli, cluster, colorspace,
ComplexHeatmap, covr, decoupleR, dplyr (>= 1.1.0), enrichplot,
forcats, ggalluvial (>= 0.12.5), ggbeeswarm, ggdist, ggExtra,
ggh4x, ggplot2 (>= 3.4.0), ggplotify, ggrastr, ggrepel,
ggridges, ggsignif, graphics, infercnv, KernSmooth, knitr,
labeling, magrittr, MASS, Matrix, methods, Nebulosa,
org.Hs.eg.db, patchwork, pheatmap, plyr, purrr, qpdf,
RColorBrewer, rjags, rlang, rmarkdown, scales, scattermore,
Seurat, SeuratObject, sf, stringr, svglite, testthat (>=
3.0.0), tibble, tidyr, UCell, viridis, withr

Imports: parallel, pbapply, caret, dplyr, tidyr, ggplot2, plotly

Imports: XML, xml2, rvest, data.table, parallel

Imports: httr, rvest, utils, magrittr, stringr

Depends: R (>= 4.1.0)
Imports: dplyr, fs, imager, magick, purrr, rlang, stringr, tibble,
utils
Suggests: knitr, rmarkdown, spelling, testthat (>= 3.0.0)

Imports: Matrix, stats, methods, utils, reshape, igraph, graphics,
grid, cli, prettyunits, ggplot2, rlang, Rcpp (>= 1.0.8)

Suggests: covr, knitr, rmarkdown, spelling, testthat (>= 3.1.0), withr

Suggests: MASS, RSQLite (>= 0.4-15), oligoClasses (>= 1.1.9), DBI

Depends: R (>= 3.5.0)
Imports: RCy3, formatR, dplyr, stringr, utils, grDevices

Suggests: ape, knitr, rmarkdown, testthat (>= 0.9.0)

Imports: Seurat, ggplot2, stringr, clustree, magrittr, Matrix, dplyr,
patchwork

Imports: ALL, ConsensusClusterPlus, scatterplot3d, ggplot2, Rtsne,
limma, edgeR, TPEA, Rmisc, lattice, plyr, ggthemes, reshape2,
PerformanceAnalytics, corrplot, Hmisc, igraph, survival

Depends: R (>= 3.60)
Imports: limma, S4Vectors, SingleCellExperiment, stats,
SummarizedExperiment, utils, uwot

Depends: R (>= 3.4.0)
Imports: cli, corrr, dplyr, ggplot2, ggrepel, glue, lifecycle,
magrittr, methods, purrr, rlang (>= 1.1.0), stats, stringr,
tibble, tidyr, tidyselect
Suggests: knitr, pkgload, rmarkdown, testthat (>= 3.0.0)