Depends: R (>= 4.1)
Imports: cli, Rcpp, dplyr, tidyr, lubridate, stringr, rlang, grid,
ggplot2, zoo, trend, mblm, R.utils
LinkingTo: Rcpp
Suggests: ggridges, ggHoriPlot, ggthemes, kableExtra, knitr, ncdf4,
rmarkdown, sf, testthat, stringi

Imports: boot, ggplot2, patchwork (>= 1.2.0), Rcpp, RcppEigen (>=
0.3.4.0.0), Rdpack (>= 2.4), stats, transport (>= 0.15.0)
LinkingTo: Rcpp, RcppEigen
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)

Imports: stats, graphics, grDevices, utils, ggplot2

Depends: R (>= 3.5.0)
Imports: softImpute, RSpectra, doParallel, Matrix, foreach
Suggests: knitr, rmarkdown, igraph, missSBM, RColorBrewer, combinat,
testthat

Imports: gridExtra, ggplot2, stringr, progress, psych, fastDummies,
fclust, MASS, devtools, foreach, doSNOW, nnet

Suggests: testthat, MASS, knitr, rmarkdown, dplyr, gsDesign, mvtnorm

Depends: R (>= 3.5.0)
Imports: dplyr, ggplot2, glue, magrittr, purrr, readr, rlang, stats,
stringr, tibble, tidyr
Suggests: cowplot, knitr, rmarkdown, tidyverse

Depends: R (>= 3.5.0), igraph, Matrix, EbayesThresh, ggplot2

Depends: R (>= 3.5.0)
Imports: dplyr (>= 1.1.0), ggplot2 (>= 3.1.1), graphics, gt, magrittr,
methods, r2rtf, rlang, stats, tibble, tidyr, tools, xtable
Suggests: covr, data.table, gridExtra, kableExtra, knitr, mvtnorm,
rmarkdown, scales, testthat, utils, vdiffr

Depends: R (>= 4.1.0)
Imports: corpcor, data.table, dplyr, gsDesign, gt, methods, mvtnorm,
npsurvSS (>= 1.1.0), r2rtf, stats, survival, tibble, tidyr,
utils, Rcpp
LinkingTo: Rcpp
Suggests: covr, ggplot2, cowplot, kableExtra, knitr, rmarkdown,
simtrial, testthat (>= 3.0.0)

Imports: rrcov, robustbase, cellWise, ggplot2, methods

Depends: R (>= 4.1.2)
Imports: graphics, grDevices, gsDesign (>= 3.2.1), methods, mvtnorm (>=
1.2-4), nlme (>= 3.1-160), stats, utils

Imports: Rcpp (>= 0.11.2), ontologyIndex (>= 2.0)

Depends: R (>= 3.5.0)
Imports: aplot, DOSE, dplyr, ggplot2, ggpp, ggrepel, ggsci, grDevices,
magrittr, purrr, RColorBrewer, reshape2, stringr, tibble, utils

Imports: SAM, penalized, gdata, stats, utils

Depends: R (>= 4.4)
Imports: Biobase, limma, Rdpack, GSVA, progress, pbapply, doParallel,
parallel, BiocParallel, metafor, RColorBrewer, pheatmap,
methods, scales, plyr, grDevices, stats, impute
Suggests: BiocStyle, qpdf, BiocGenerics, RUnit, knitr, rmarkdown