Depends: R (>= 3.4)
Imports: matrixStats, foreach, doParallel, igraph, Matrix, uwot,
cluster, Rcpp, RcppParallel, RcppAnnoy, methods, torch (>=
0.3.0), RhpcBLASctl, coro
LinkingTo: Rcpp, RcppArmadillo, RcppParallel, RcppAnnoy
Suggests: testthat, knitr, mclust

Depends: nlme, R (>= 3.0.1)
Imports: stats, utils, readxl, rlang, dplyr, tidyselect, magrittr,
lmeInfo (>= 0.3.0)
Suggests: knitr, markdown, rmarkdown, ggplot2, plyr, boot, parallel,
shiny, shinytest, glue, janitor, rclipboard, rvest, testthat,
snow, doSNOW, foreach, iterators, reshape, rlecuyer

Depends: R (>= 4.0.0)
Imports: data.table, DelayedArray, future, future.apply, lifecycle,
magrittr, methods, Seurat (>= 5.0.0), stats, utils
Suggests: biomaRt, covr, DT, ggplot2, GOSemSim, igraph, kableExtra,
KEGGREST, knitr, ontologyIndex, ontoProc, pkgdown, plotly,
RColorBrewer, rmarkdown, rrvgo, spelling, shiny, shinythemes,
shinyWidgets, testthat (>= 3.0.0), visNetwork

Imports: sandwich, strucchange, mirt, zoo,
Suggests: mvtnorm, psychotree, knitr, rmarkdown, testthat

Imports: broom.mixed, DT, ggplot2, MASS, mmcards, mmints, nlme, shiny,
shinythemes, sn

Suggests: rmarkdown, knitr, scater, splatter

Imports: cli, cookies, glue, purrr, rlang, shiny
Suggests: covr, knitr, pkgload, rmarkdown, stringr, testthat (>= 3.0.0)

Depends: R (>= 2.10), MASS, parallel, SCEPtER
Suggests: lattice

Depends: R (>= 3.6)
Imports: ggplot2, haven, httr, rlang, stats, survey, utils
Suggests: dplyr, hexbin, kableExtra, knitr, mitools, rmarkdown,
markdown, testthat (>= 3.0.0)

Depends: R (>= 2.10)
Imports: readr, stringr, tidyselect, dplyr, tibble, utils, ggplot2,
tidyr, magrittr

Depends: R (>= 4.3.0)
Imports: Seurat (>= 4.0.0), UCell (>= 2.6.0), dplyr, stats, utils,
methods, patchwork, ggridges, colorspace, reshape2, ggplot2,
BiocParallel
Suggests: ggparty, partykit, knitr, rmarkdown

Imports: Matrix, Formula, graphics, ggplot2 (>= 3.0.0), grid,pROC (>=
1.9), ade4, rlang, pls

Depends: R (>= 2.10)
Imports: limma, Seurat(>= 5.0.0), biomaRt, dplyr, magrittr, stats,
tibble, tidyr, Matrix, utils, networkD3, slanter
Suggests: knitr, devtools, pheatmap, rmarkdown, httr