Depends: R (>= 3.3)
Imports: ggplot2 (>= 3.3), lubridate, reticulate, scales, terra
Suggests: magick, testthat (>= 3.0.0), openair, sf

Depends: R (>= 3.5.0)
Imports: methods, graphics, grDevices, stats, utils, magrittr
Suggests: digest, ggplot2, knitr, rmarkdown, testthat, glmnet, mvtnorm

Depends: R (>= 3.0.0), lpSolve, pcaPP, igraph
Suggests: parallel

Depends: R (>= 4.2.0)
Imports: checkmate, english, epiparameter (>= 0.4.0), grates,
randomNames, rlang, stats
Suggests: dplyr, epicontacts (>= 1.1.3), ggplot2, incidence2 (>=
2.6.2), knitr, rmarkdown, spelling, testthat (>= 3.0.0), tidyr

Depends: R (>= 3.4), arrangements, matrixStats, igraph, graphics,
grDevices
Imports: pracma

Depends: R (>= 3.2.0)
Imports: rstudioapi, utils, tools, sos, stringi, yaml, crayon, cli,
rematch2
Suggests: rcmdcheck, git2r, shiny, miniUI, withr, usethis, fs, details,
roxygen2, testthat, knitr, rmarkdown

Depends: R (>= 2.10)
Imports: stats, CholWishart, MASS, withr
Suggests: knitr, rmarkdown, bookdown, lme4, lmerTest, testthat (>=
2.1.0)

Imports: stats, purrr, dplyr, tidyr, rlang, tidyselect, utils
Suggests: spelling, shiny, stringr, rvest, xml2, ggplot2, purrrlyr,
testthat, markdown, knitr, rmarkdown, cleanrmd, Kendall,
kableExtra, covr, readxl, glue, janitor, rclipboard

Depends: R (>= 4.0.0)
Imports: ComplexHeatmap (>= 2.10.0), Seurat (>= 4.0.0), dplyr (>=
1.0.0), tidyr (>= 1.0.0), RColorBrewer, circlize (>= 0.4.0),
grid, grDevices, stats, magrittr
Suggests: testthat (>= 3.0.0), knitr, rmarkdown, viridis, devtools,
BiocManager, ggsci, SeuratObject

Imports: methods, Matrix, splines, ggplot2, reshape2
Suggests: knitr, rmarkdown, testthat, SummarizedExperiment,
SingleCellExperiment, SeuratObject, cowplot, wrswoR,
sparseMatrixStats, ComplexHeatmap, patchwork

Imports: matrixStats, Matrix, stats, utils, vegan

Depends: R (>= 3.5.0)
Imports: stats, lamW, mathjaxr, sandwich, doParallel, foreach, parallel
Suggests: rmarkdown, knitr, tinytest, covr, VGAM, lmtest

Depends: R (>= 3.5)
Imports: stats, shiny, shinycssloaders, shinyjs

Imports: cli, graphics, grDevices, png, purrr, rstudioapi, tibble,
utils
Suggests: convey, dplyr, httr, magrittr, projmgr, RCurl, readr, readxl,
srvyr, survey, timeDate