Create, Plot and Compare Replication Timing Profiles. The method is described in Muller et al., (2014) <doi: 10.1093/nar/gkt878>.

Tools to load 'R' packages
    and automatically generate BibTeX files citing them as well as load and
    cache plain-text and 'Excel' formatted data stored on 'GitHub', and
    from other sources.

Tools for generating descriptives and report tables for different models,
    data.frames and tables and exporting them to different formats.

A data manager meant to avoid manual storage/retrieval of
    data to/from the file system. It builds one (or more) centralized
    repository where R objects are stored with rich annotations,
    including corresponding code chunks, and easily searched and
    retrieved. See Napolitano (2017) <doi:10.1037/a0028240> for further
    information.

Generates a project and repo for easy initialization of a GitHub repo for R workshops. The repo includes a README with instructions to ensure that all users have the needed packages, an 'RStudio' project with the right directories and the proper data. The repo can then be used for hosting code taught during the workshop.

Fits linear models to repeated ordinal scores using GEE methodology.

The aim of the 'report' package is to bridge the gap between
    R’s output and the formatted results contained in your manuscript.
    This package converts statistical models and data frames into textual
    reports suited for publication, ensuring standardization and quality
    in results reporting.

Contains functions to create regulatory-style statistical reports.
    Originally designed to create tables, listings, and figures for the 
    pharmaceutical, biotechnology, and medical device industries, these
    reports are generalized enough that they could be used in any industry.
    Generates text, rich-text, PDF, HTML, and Microsoft Word file formats.  
    The package specializes 
    in printing wide and long tables with automatic page wrapping and splitting.  
    Reports can be produced with a minimum of function calls, and without 
    relying on other table packages.  The package supports titles, footnotes, 
    page header, page footers, spanning headers, page by variables, 
    and automatic page numbering.