Imports: stats, grDevices, graphics, splines, np, Matrix, moments,
nor1mix, spatstat.univar, lattice, MASS, pbivnorm, parallel

Imports: Rcpp (>= 0.11.1), methods, stats

Depends: R (>= 3.5.0), reportROC, pROC, stats

Imports: methods, graphics, grDevices, gplots, stats

Imports: numDeriv, quadprog, Matrix, rootSolve, matrixcalc

Suggests: knitr, testthat, rmarkdown, ggplot2, dplyr, tidyr, covr,
scales

Suggests: knitr, rmarkdown, xtable, rootSolve

Depends: R (>= 3.5.0)
Imports: ape (>= 5.0), cli (>= 3.0), fastmatch, grDevices, matrixStats,
Rdpack (>= 0.7), Rfast, stats, TreeDist (> 2.2.0), TreeTools
(>= 1.9.1.9003), utils,
Suggests: knitr, PlotTools, rmarkdown, spelling, testthat,

Imports: methods, registry (>= 0.5), slam, utils, checkmate

Imports: methods, stats, utils, ROI (>= 1.0-0), alabama (>= 1.0.1)

Imports: stats, methods, slam, ROI (>= 1.0-0), clarabel (>= 0.5.1)

Imports: methods, ROI (>= 0.3-0), Rcplex (>= 0.3-3), slam

Imports: methods, stats, utils, ROI (>= 1.0-0), DEoptim, DEoptimR (>=
1.0-10)

Imports: methods, slam, Matrix, ROI (>= 1.0-0), ECOSolveR (>= 0.5.4)

Imports: methods, ROI (>= 0.3-0), Rglpk (>= 0.6-2)

Imports: methods, ROI (>= 0.3-0), kernlab, slam

Imports: stats, methods, utils, ROI (>= 0.3-0), lpSolveAPI (>=
5.5.2.0-1)
Suggests: slam

Imports: stats, methods, utils, slam, ROI (>= 1.0-0)

Imports: stats, methods, utils, ROI (>= 1.0-0), xmlrpc2, xml2
Suggests: slam

Imports: methods, stats, utils, ROI (>= 1.0-0), nloptr (>= 1.2.1)

Imports: methods, stats, utils, ROI (>= 1.0-0), optimx
Suggests: BB, ucminf, minqa, dfoptim, lbfgsb3c, lbfgs, subplex

Imports: methods, slam, ROI (>= 1.0-1), osqp, Matrix

Imports: methods, slam, ROI (>= 1.0-0), Rcpp (>= 0.12.11), checkmate
LinkingTo: Rcpp

Imports: methods, quadprog, ROI (>= 0.3-0), slam

Imports: stats, methods, slam, ROI (>= 1.0-0), scs (>= 3.2-4)

Imports: methods, ROI (>= 0.3-0), Rsymphony, slam

Imports: Rcpp, smarter, ggplot2, survival, MiRKAT
LinkingTo: Rcpp, RcppArmadillo
Suggests: rmarkdown, knitr, reshape2, ggdendro

Depends: R (>= 4.1.0)
Imports: dm, dplyr, methods, purrr, readr, rlang, sf, snakecase,
tibble, tidyr, tidyselect, tools, utils, when, xlsx
Suggests: DBI, dbplyr, DiagrammeR, DiagrammeRsvg, knitr, lubridate,
magrittr, maps, pander, pivottabler, RMariaDB, rmarkdown,
RSQLite, stringr, testthat (>= 3.0.0)